LOC_Os10g28340

Expression Profile

RGAP LOCUS ID LOC_Os10g28340
RAP-DB ID Os10g0419300
Function heat stress transcription factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12

2) CELLO Prediction
localization Nuclear
score 3.227

3) NUCPRED Prediction
localization Nuclear
score 0.84

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 1
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category HSF

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHSF6|OsHsfA2c|OsHsfA6a
Function assigned as per literature  OsHsfA2c play a role as transcriptional activator
Subcellular localization as per literature OsHsfA2c is localized majorly to nucleus when intract with OsClpB-Cyt
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 22147560
Reference of localization https://link.springer.com/article/10.1007%2Fs12192-011-0303-5
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 5
Number of PAT7 0
Number of Bipartite 1
Basic residues % 0.128
NLS score 1.46
Protein Sequence >LOC_Os10g28340.1 protein
MDPAAAGIVKEEMLESQQQQRQEDGGAAPRPMEGLHEVGPPPFLTKTYDLVEDPATDGVVSWSRAGNSFVVWDPHVFADLLLPRLFKHNNFSSFVRQLNT
YGFRKVDPDRWEFANEGFLRGQRHLLKTIKRRKPPSNAPPSQQQSLTSCLEVGEFGFEEEIDRLKRDKNILITEVVKLRQEQQATKDHVKAMEDRLRAAE
QKQVQMMGFLARAMRNPEFFQQLAQQKEKRKELEDAISKKRRRPIDNVPFYDPGETSQTEQLDSPYLFDSGVLNELSEPGIPELENLAVNIQDLGKGKVD
EERQNQTNGQAELGDDFWAELLVEDFTGKEEQSELDGKIDGIDELAQQLGYLSSTSPK

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES