| RGAP LOCUS ID |
LOC_Os10g28330 |
| RAP-DB ID |
Os10g0419200 |
| Function |
ZOS10-04 - C2H2 zinc finger protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
13 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
3.605 |
3) NUCPRED
Prediction
|
| localization |
Nuclear |
| score |
0.85 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
99.91 |
| confidence value |
0.89 |
| Number Of Software Predicting Nucleus |
4 |
| Seed Specific |
No |
| Transcription factor category |
C2H2 |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
Ehd2|RID1 |
| Function assigned as per literature |
RID1encodes a Cys2/His2-type zinc finger transcription factorwhich acts as a master switch for flowering induction in rice |
| Subcellular localization as per literature |
Nucleus (A construct was used that includes the 112 amino acids at the N terminus of RID1, fused to the GFP protein and driven by the maize Ubiquitin promoter (Ubi::ΔRID1:GFP)) |
| Cells used for localization experiment |
Onion epidermal cells |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
18725639 |
| Reference of localization |
http://www.pnas.org/content/105/35/12915.long |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
2 |
| Number of PAT7 |
3 |
| Number of Bipartite |
0 |
| Basic residues % |
0.103 |
| NLS score |
1.3 |
| Protein Sequence |
>LOC_Os10g28330.1 protein
MAAAQEPRAKKKRSLPGNPDPEAEVIALSPRALVATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLRHRAAAVSAVTTAAPAPRKRVYVCPEPTCVHHD
PARALGDLTGIKKHFSRKHGEKRWRCERCGKRYAVHSDWKAHVKNCGTREYRCDCGILFSRKDSLLTHRAFCDALAEESARLLAAANNSSSITTTTCNNS
NISSNNNNNNINSISNSNNLLITSSSSSPPLFLPFSTTPAENPNPNQLLFLQQHQAAHHQLLLPQFQQPPSSPPAYFDHLAFGGGGGVITGSSCNDDNSS
IAGDVMVAAGGDSVSFGLTSEGSVTMHAGDVGRRRLTRDFLGVDHDAGEVDELELDELPADLSTTAAACQGCNFAAATTAACCATDFTTGSRQYLGRLPP
VNETWSHNF |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
intracellular |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
reproduction |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
nucleic acid binding |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
binding |
|
| 10 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| Presence of Splice variants |
No |
