LOC_Os10g27230

Expression Profile

RGAP LOCUS ID LOC_Os10g27230
RAP-DB ID Os10g0412100
Function endonuclease/exonuclease/phosphatase family domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 6

2) CELLO Prediction
localization Nuclear
score 1.762

3) NUCPRED Prediction
localization Non Nuclear
score 0.4

4) Y-Loc Prediction
localization Cytoplasm
score 39
confidence value 0.08
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCCR4a
Function assigned as per literature
Subcellular localization as per literature Nucleus and cytoplasm
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 27714489
Reference of localization https://link.springer.com/article/10.1007%2Fs11103-016-0548-6
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.102
NLS score -0.47
Protein Sequence >LOC_Os10g27230.3 protein
MLSVVRVHLPSEIPIVGCEITPYVLLRLPTGVVSTDDVPEAAPADGYFMRYRWYRIQSDRKVAICSVHPMEQATIQCLGCVKSKIPVAKSYHCSAKCFSD
AWQHHRVLHERASSALNENGAEEEELFGRFGSTGSGVLSTTGSGSMSNLGQSPGLNNGPVPLYPSGTDKNSGETWYEVGRTRTYTPTADDIGHVLRFECV
SVDAEKKVPVGPPTSIMTSRVIPAPTPTPRRLIQVNGDVLSHLDLDSQTSFGTFSVLSYNILADAYATSDAYSYCPTWALSWTYRRQNLMREIIGYHADI
ICLQEVQLNHFEDFFSPELDKHGYQALYKKRTTEVYTGAPHAIDGCATFFRRDKFSHVKKYEVEFNKAAQSLTDAIIPSTQRRVALSRLIKDNVALIAVL
EAKFGNHGTDNPGKRQLLCVANTHVNVHQDLKDVKLWEVQTLLKGLEKIAVSADIPMLVCGDFNSVPGSSPHGLLAMGKVDQLHPDLAIDPLGILRPASK
LTHQLPLVSAYSSFARMVGVGYDLEHQRRRMDPATNEPLFTNCTRDFTGTVDYIFYTADSLSVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCK
PRIRR

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Molecular Function
GO Term hydrolase activity
Presence of Splice variants YES