LOC_Os10g26280

Expression Profile

RGAP LOCUS ID LOC_Os10g26280
RAP-DB ID Os10g0402200
Function ORC3 - Putative origin recognition complex subunit 3, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 4.5

2) CELLO Prediction
localization Nuclear
score 1.809

3) NUCPRED Prediction
localization Non Nuclear
score 0.71

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.25
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsORC3
Function assigned as per literature OsORC3 plays a crucial role in the emergence of lateral root primordia
Subcellular localization as per literature Nucleus
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 23346890
Reference of localization https://onlinelibrary.wiley.com/doi/full/10.1111/tpj.12126
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 3
Number of Bipartite 0
Basic residues % 0.121
NLS score 1.23
Protein Sequence >LOC_Os10g26280.1 protein
MAAPPGEAPLTAATNIEPFYVLHKGGAAASSSSSSAPSLPSSGRARRRIDVSGLASPNPKPGKRSRDDDAAEDDDDDELYERLRLDAFHRVWSKIQSTIN
EVLRGISLKLFDQVLRWVQESFSAVRSIARPSAAEVRQPYPLLTDVICRKIPTAFVLTKNAEFVDDITTFRDLAEYLESNGCHLAKLSATELSEKNGVGC
CFRSLLRQLLSDVPDVADIFALASWYSAAENYDQPIVVVIDDLEQCSGDVLGELVMMLSEWVIKIPIFFVMGIATTLDAPRKLLSSEDLQRLEPCKLTLG
SPSDRMNALVEAILVKPCAGFCISHEVAVFLRNYFFKHDGTITSFISALKLACSKHFSVEPLSFLCMGMLEEDRENFWHDKFNALPQELRKYASGLPSCT
REKDSTKSGDNMVDGLSELMNIQKDWSSVLLCLYEAGKHGKVQLLDIFCEAVNPDLHTQKAPNLPNEKSGTSRRFIDQVMDTIRYLPVETLFCLLEVWSI
HLNGMDKITNKVKELQSTTISTDSVRITKDKWPRRSTNSTGNSTVALNDKVAMLLDDVTRKFLVSVECLPFHEIVCFKNVSILQSALIGNPRRMVQLDLV
KSHKHLKCSCCRKNGIAVLASMHDTSIMCNLAQEYGDVINLHDWYISFDGIINSVHSKIKRKPHTSPSKKKSKPVAAESEAMIQARFCRAVTELQITGLL
RMPSKRRPDLVQRIAFGL

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term intracellular
2
GO Category Molecular Function
GO Term protein binding
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term DNA metabolic process
Presence of Splice variants No