LOC_Os10g25850

Expression Profile

RGAP LOCUS ID LOC_Os10g25850
RAP-DB ID Os10g0397900
Function nuclear transcription factor Y subunit, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 11

2) CELLO Prediction
localization Nuclear
score 4.355

3) NUCPRED Prediction
localization Non Nuclear
score 0.74

4) Y-Loc Prediction
localization Nuclear
score 99.93
confidence value 0.98
Number Of Software Predicting Nucleus 3
Seed Specific Yes
Transcription factor category CCAAT/NF_YA

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsNF-YA8
Function assigned as per literature Preferentially expressed in the rice endosperm
Subcellular localization as per literature Nuclear
Cells used for localization experiment Tobacco Leaf epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 29514259
Reference of localization https://academic.oup.com/jxb/article/69/10/2495/4920837
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 3
Basic residues % 0.157
NLS score 1.01
Protein Sequence >LOC_Os10g25850.1 protein
MGFGESTQGNQRKLDGPGKVSTELSLVNLEAKNLHPKPECNQPIEHIPTKGMKCTPLLPLPTEHADDEPIYVNAKQYHAIIRRRQRRKIVGSEDKVAAIR
KRILVEARQKQAKLRHRGKGGRFISIEHPLELSMDDQISKNGGSASPSSSTVSENSSNVNGFTGDL

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleoplasm
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No