| RGAP LOCUS ID |
LOC_Os10g25780 |
| RAP-DB ID |
Os10g0397400 |
| Function |
FAD-linked oxidoreductase protein, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
cyto |
| score |
6 |
2) CELLO
Prediction
|
| localization |
Cytoplasmic |
| score |
1.973 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.28 |
4) Y-Loc
Prediction
|
| localization |
Mitochondrion |
| score |
|
| confidence value |
0.04 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
BRD2|DIM|DWF1|LHDD10|LTBSG1 |
| Function assigned as per literature |
LTBSG1 could play a new role in regulating panicle and grain development by BR biosynthetic pathway. |
| Subcellular localization as per literature |
chloroplast, nucleus and cytomembrane |
| Cells used for localization experiment |
Rice protoplasts cells |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
29891831 |
| Reference of localization |
https://www.mdpi.com/2073-4425/9/6/292 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
3 |
| Number of PAT7 |
2 |
| Number of Bipartite |
1 |
| Basic residues % |
0.132 |
| NLS score |
1.52 |
| Protein Sequence |
>LOC_Os10g25780.1 protein
MVKWKCDGCNCVNTAEKILINNHSRTAAMADLQEPLVRPKRKKVLVDYLVKFRWILVIFVVLPISALIYFNIYLGDVWSAMKSEKRRQKEHDDNVQKVVK
RLKQRNPKKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILEIDRERMVAKVEPLVNMGQITRATCPMNLALAVVAELDDLTVGGLINGYGIEG
SSHLYGLFSDTVVAVEVVLADGRVVRATKDNEYSDLFYGIPWSQGTLGFLVSAEIKLIPIKEYMRLTYTPVKGSLKEIAQGYCDSFAPRDGDPAKVPDFV
EGMVYTENEGVMMTGVYASKEEAKKKGNKINCVGWWFKPWFYQHAQTALKKGEFVEYIPTREYYHRHTRCLYWEGKLILPFGDQFWFRFLLGWLMPPKVS
LLKATQGESIRNYYHDNHVIQDMLVPLYKVGDALEFVHKEMEVYPLWLCPHRLYKLPVKTMVYPEPGFEHHHRQGDTSYAQMFTDVGVYYAPGAVLRGEE
FNGALAVHRLEQWLIENHSYQPQYAVSELNEKDFWRMFDASHYEHCRQKYGAVGTFMSVYYKSKKGRKTEKEVQEAEAAILEPAYADEA |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
lipid metabolic process |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
cellular component organization |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
anatomical structure morphogenesis |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
cell growth |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| 9 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
vacuole |
|
| 10 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 11 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plasma membrane |
|
| Presence of Splice variants |
YES |
