LOC_Os10g25770

Expression Profile

RGAP LOCUS ID LOC_Os10g25770
RAP-DB ID Os10g0397200
Function transcription initiation factor IIE subunit beta, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 8

2) CELLO Prediction
localization Mitochondrial
score 2.815

3) NUCPRED Prediction
localization Non Nuclear
score 0.71

4) Y-Loc Prediction
localization Nuclear
score 81
confidence value 0.32
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) TFIIE
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 2
Number of Bipartite 1
Basic residues % 0.176
NLS score 1.21
Protein Sequence >LOC_Os10g25770.2 protein
MDLKDSLSKFKQQQERCQSSLASIAASTSKPKHRAQPVNAPSAPARPLQPIKFSNDTERLQHINSVRKSPIGAQIKLVIELLYKTRQAFTAEQINETTYV
DIHGNKSVFDSLRNNPKVHYDGRRFSYKSKHDLKGKDQLLVLVRKYPEGLAVVEVKDAYPTVMEDLQALKAAGEVWLLSNMDSQEDIVYPNDPKAKIKVD
DDLKQLFREMELPRDMVDIEKELQKNGIKPMTNTAKRRAAAQINGVQPKAKPKKKQREITRRTKLTNAHLPELFQNLNT

GO Analysis
1
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
2
GO Category Biological Process
GO Term biosynthetic process
Presence of Splice variants YES