| RGAP LOCUS ID |
LOC_Os10g25130 |
| RAP-DB ID |
Os10g0390500 |
| Function |
aminotransferase, classes I and II, domain containing protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
cyto |
| score |
9 |
2) CELLO
Prediction
|
| localization |
Cytoplasmic |
| score |
1.54 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.09 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
99 |
| confidence value |
0.83 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
AlaAT|OsAlaAT1 |
| Function assigned as per literature |
OsAlaAT1 playsan essential role in starch synthesis in developing seeds that are exposed to low concentrations of oxygen. |
| Subcellular localization as per literature |
Cytosol |
| Cells used for localization experiment |
rice mesophyll protoplasts |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
26475189 |
| Reference of localization |
https://www.sciencedirect.com/science/article/pii/S0168945215300339?via%3Dihub |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.099 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os10g25130.1 protein
MAAPSVAVDNLNPKVLNCEYAVRGEIVIHAQRLQQQLQTQPGSLPFDEILYCNIGNPQSLGQKPVTFFREVIALCDHPCLLEKEETKSLFSADAISRATT
ILASIPGRATGAYSHSQGIKGLRDAIAAGIASRDGYPANADDIFLTDGASPGVHMMMQLLIRNEKDGILCPIPQYPLYSASIALHGGALVPYYLNESTGW
GLEISDLKKQLEDSRLKGIDVRALVVINPGNPTGQVLAEENQRDIVKFCKNEGLVLLADEVYQENIYVDNKKFNSFKKIARSMGYNEDDLPLVSFQSVSK
GYYGECGKRGGYMEITGFSAPVREQIYKVASVNLCSNITGQILASLVMNPPKAGDASYASYKAEKDGILQSLARRAKALENAFNSLEGITCNKTEGAMYL
FPQLSLPQKAIDAAKAANKAPDAFYALRLLEATGIVVVPGSGFGQVPGTWHIRCTILPQEEKIPAIISRFKAFHEGFMAAYRD |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 2 |
| GO Category |
Molecular Function |
| GO Term |
nucleotide binding |
|
| 3 |
| GO Category |
Molecular Function |
| GO Term |
transferase activity |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
catabolic process |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
biological_process |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 9 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
mitochondrion |
|
| 10 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| Presence of Splice variants |
No |
