LOC_Os10g11580

Expression Profile

RGAP LOCUS ID

LOC_Os10g11580

RAP-DB ID

Os10g0191900

Function

histone-like transcription factor and archaeal histone, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization

Nuclear

score

2) CELLO Prediction

localization

Nuclear

score

2.274

3) NUCPRED Prediction

localization

Non Nuclear

score

0.18

4) Y-Loc Prediction

localization

Nuclear

score

99.92

confidence value

0.99

Number Of Software Predicting Nucleus

Seed Specific

Yes

Transcription factor category

CCAAT/NF_YC

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020)

NF-YC12|OsNF-YC12

Function assigned as per literature

NF-YC12 coordinates multiple pathways to regulate endosperm development and the accumulation of storage substances in rice seeds

Subcellular localization as per literature

NF-YC12 and NF-YB1 interact to form heterodimer predominantly in the nucleus

Cells used for localization experiment

Rice protoplast

NUCLEAR or Not Nuclear

NUCLEAR

PMID

31211389

Reference of localization

https://academic.oup.com/jxb/article/70/15/3765/5442606

Is Subcellular localization evidence by author available ?

Sequence Analysis

Number of PAT4

Number of PAT7

Number of Bipartite

Basic residues %

0.081

NLS score

-0.29

Protein Sequence

>LOC_Os10g11580.1 protein
MPIPEKDGVEDNQEDDTFSRLQLLAQQRHAMEKFWRMSQEQIEESAGNEELILPISRVKNIIHAKEGGMMLSADTPAFVTKLCELFVQELILRAWVCANS
HNREIILGTDIAEAITTTESYHFLANVVHGHQALGSNIPEIGVSAWKRHKLDEMTSLCHPPQAVQVTDLANHPPNIPVCPPIGQSGTQHTTSTHVLMMQG
ESIHKASKEKSPLKEVMVPTNKVGMTNSSYGVPNGGGATSSKVVIDSPKGETAQVFSSQHACPSLEDNYVIPIPAGHGDSFRTLDEANIPQLHQEQKNFI
SQDAIVGENIPLNESLEKSKHKDEDLLFPDKDLPE

GO Analysis

GO Category	Molecular Function
GO Term	DNA binding

GO Category	Cellular comBiological Processonent
GO Term	nucleus

GO Category	Biological Process
GO Term	response to endogenous stimulus

GO Category	Biological Process
GO Term	signal transduction

GO Category	Biological Process
GO Term	biosynthetic process

GO Category	Biological Process
GO Term	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

GO Category	Molecular Function
GO Term	sequence-specific DNA binding transcription factor activity

Presence of Splice variants