LOC_Os10g11140

Expression Profile

RGAP LOCUS ID LOC_Os10g11140
RAP-DB ID Os10g0189100
Function phosphoglucomutase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 13

2) CELLO Prediction
localization Chloroplast
score 2.163

3) NUCPRED Prediction
localization Non Nuclear
score 0.23

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.66
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OspPGM
Function assigned as per literature OspPGM has role in starch synthesis in rice pollen grains and cause male sterility.
Subcellular localization as per literature plastid
Cells used for localization experiment maize protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 27588462
Reference of localization https://academic.oup.com/jxb/article/67/18/5557/2485718
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.108
NLS score -0.47
Protein Sequence >LOC_Os10g11140.1 protein
MASHALRLHPLLFSAAAARPAPLAARPGGGARRVHRRHSLAVVRCSSSAAQALKIKSIPTKPVEGQKTGTSGLRKKVKVFQQENYLANWIQALFNSLPPE
DYVGGTLVLGGDGRYFNKDAAQIITKIAAGNGVGKILVGRNGLLSTPAVSAVIRKRQANGGFIMSASHNPGGPDNDWGIKFNYSSGQPAPETITDQIYGN
TLSISEIKTADIPDVDLSSLGVVSYGDFTVEVIDPVLDYLELMENVFDFQLIKGLLSRPDFRFVFDAMHAVTGAYADPIFVEKLGADPDYILNGVPLEDF
GNGHPDPNLTYAKELVFTMFGSGAPDFGAASDGDGDRNMILGRRFFVTPSDSVAIIAANAQAAIPYFQSGPKGLARSMPTSGALDRVADKLNVPFFEVPT
GWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSILAHRNKDKKAGERLVSVEDVAREHWATYGRNFFSRYDYEECESESANKMMEHLRDV
IAKSKPGEKYGNYTLQFADDFSYTDPVDGSTVSKQGLRFVFTDGSRIIFRLSGTGSAGATIRIYIEQFESDASKHDLDAQIALKPLIDLALSVSKLKDFT
GRDKPTVIT

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term extracellular region
2
GO Category Biological Process
GO Term response to external stimulus
3
GO Category Biological Process
GO Term response to abiotic stimulus
4
GO Category Cellular comBiological Processonent
GO Term cytosol
5
GO Category Biological Process
GO Term carbohydrate metabolic process
6
GO Category Cellular comBiological Processonent
GO Term plastid
7
GO Category Biological Process
GO Term cellular homeostasis
8
GO Category Biological Process
GO Term metabolic process
9
GO Category Biological Process
GO Term biosynthetic process
10
GO Category Biological Process
GO Term cellular process
11
GO Category Biological Process
GO Term response to stress
12
GO Category Molecular Function
GO Term catalytic activity
13
GO Category Biological Process
GO Term catabolic process
Presence of Splice variants YES