LOC_Os10g10360

Expression Profile

RGAP LOCUS ID LOC_Os10g10360
RAP-DB ID Os10g0183000
Function NBS-LRR disease resistance protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 7

2) CELLO Prediction
localization Nuclear
score 1.657

3) NUCPRED Prediction
localization Non Nuclear
score 0.43

4) Y-Loc Prediction
localization Cytoplasm
score 53
confidence value 0.26
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsLSR
Function assigned as per literature OsLSR plays a role in maintaining immune status and thiamine level in plant cells
Subcellular localization as per literature Chloroplasts ( Two fragments,OsLSR1-178 and OsLSR464-546, were used)
Cells used for localization experiment Tobacco leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 27052628
Reference of localization https://www.nature.com/articles/srep24079
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.122
NLS score -0.16
Protein Sequence >LOC_Os10g10360.3 protein
MTASVVSSVLQRLGDLVIQEATFLSDVPRQVSSMKAELSQMQCFLNVVDAKCLEGNSMMKNLASNIQDVAYRVEEVIDNAHFIFRRRKTSVSKYTHIFGD
SIDLREVGKNIQVIRKEISEIFERYNRYNAVNSSTSTEAQPIFREDEDFYAQRLVPPGLDQGMDIVGFDHEIAQIKSYLLDQNNMNLTVISIVGQAGAGK
STLAKLAYSSVITEGYFHKYGWVSISPKYSALEVLRDLVRQIRGTGKISERKSMHLNFYGETEVSKLIFDFLKEERYLIVLDDIWTTDTWDKIKSVFPDK
GNGSRIILTTRDMEVGQHPKTKVQIHTPDLLDEDKSWELFQKKAFPHDVQFTELEVVGKKLSKKCNGLPLALVVLGCFLSRNHNIHTWEKMVASVDWEIM
KKEGDVGRILALSYHNMSNNLKACFLYTASFPEDYPITVHVLKKMWIAEGFVPNIRGYTQEEVAYRYVEELAQRCMIQIEERSKNIGWIKKIKVHDVLRE
WGIGQARKEGFLKVCSSGTDVETYYADEQRCYRVAFHGYFDNEVGKSVLNLRSVLAFNPDGKRLFSFNGLHLLRVLHFCSSLKTCTLPEEINKLVHLRYL
GLEGSTVFMFPSYMKGLRNLQILEASTATVKALPSSLWSIAALKHVHVYQVLHWKAQEIRTKRSLQTLYVFSIMQCDALTWKRTIRSLQKMSQHVSWCLG
IASTKRVKEKETQEHEEYNLDIRVDALESKVDGLELSGCFKERHVLNDVLPHHNLFPNFLLQLKISCPNILNDDPMPILERLPRLEVLEIVNSSYTGKRI
TCSSEGFLALRSLVLMDIGLEEWNLQQGSMAFLAVLTLKCTMLRSISNVLHQLDDLVELRLICMPQLSVDDHEPARGRGCRVMISVDEEQTSDT

GO Analysis
1
GO Category Molecular Function
GO Term nucleotide binding
2
GO Category Biological Process
GO Term response to stress
Presence of Splice variants YES