LOC_Os10g08580

Expression Profile

RGAP LOCUS ID LOC_Os10g08580
RAP-DB ID Os10g0167600
Function FAD binding domain of DNA photolyase domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 6

2) CELLO Prediction
localization Mitochondrial
score 2.527

3) NUCPRED Prediction
localization Non Nuclear
score 0.51

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.2
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) CPD|OsCPDP|qUVR-10
Function assigned as per literature CPD photolyase functions in chloroplasts, mitochondria and nuclei, and protect their DNA from the harmful effects of UV-B radiation
Subcellular localization as per literature Nucleus, Chloroplast, Mitochondria
Cells used for localization experiment Rice leaf
NUCLEAR or Not Nuclear NUCLEAR
PMID 21251107
Reference of localization https://onlinelibrary.wiley.com/doi/full/10.1111/j.1365-313X.2011.04500.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.132
NLS score -0.47
Protein Sequence >LOC_Os10g08580.1 protein
MPPTSVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGPVVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRL
AADAAARHLPFFLFTGGPAEIPALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKMEYSAKTFRGKVSKVMDEYL
VEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCAL
EAKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREHIYTREQLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWA
KKILEWTSGPEEALSTAIYLNDKYEIDGRDPSGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKRLAGQSKKRNAEESPNPVVK
LSKSQH

GO Analysis
1
GO Category Biological Process
GO Term response to stress
2
GO Category Biological Process
GO Term DNA metabolic process
3
GO Category Biological Process
GO Term response to abiotic stimulus
4
GO Category Biological Process
GO Term metabolic process
5
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants No