LOC_Os10g06540

Expression Profile

RGAP LOCUS ID LOC_Os10g06540
RAP-DB ID Os10g0154000
Function vesicle-associated membrane protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 5

2) CELLO Prediction
localization PlasmaMembrane
score 3.483

3) NUCPRED Prediction
localization Non Nuclear
score 0.2

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.33
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsVAMP714
Function assigned as per literature  OsVAMP714-mediated trafficking pathway plays an important role in rice blast resistance as well as in the vegetative growth of rice.
Subcellular localization as per literature Chloroplasts
Cells used for localization experiment leaf mesophyll cells 
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26879413
Reference of localization https://link.springer.com/article/10.1007%2Fs11103-016-0444-0
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.124
NLS score -0.47
Protein Sequence >LOC_Os10g06540.1 protein
MAIVYAVVARGTVVLAEFSAVSGNAGAVARRILEKLPPDAESRLCFAQDRYIFHVLRSPPPAAADGLTFLCMANDTFGRRIPFLYLEDIQMRFIKNYGRI
AHNALAYAMNDEFSRVLHQQMEYFSSNPSADTLNRLRGEVSEIHTVMVDNIEKILDRGERISLLVDKTSTMQDSAFHFRKQSRRLRRALWMKNAKLLAVL
TAVIVLLLYLIIAAFCGGLSLPSCRS

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term membrane
3
GO Category Cellular comBiological Processonent
GO Term Golgi apparatus
4
GO Category Biological Process
GO Term response to stress
5
GO Category Biological Process
GO Term response to abiotic stimulus
6
GO Category Cellular comBiological Processonent
GO Term vacuole
Presence of Splice variants YES