LOC_Os09g39960

Expression Profile

RGAP LOCUS ID LOC_Os09g39960
RAP-DB ID Os09g0572900
Function dynamin family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 8

2) CELLO Prediction
localization Cytoplasmic
score 2.342

3) NUCPRED Prediction
localization Non Nuclear
score 0.2

4) Y-Loc Prediction
localization Cytoplasm
score 41
confidence value 0.22
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsDRP1E
Function assigned as per literature OsDRP1E functions as a negative regulator of cytochrome c release and programmed cell death in plants
Subcellular localization as per literature Mitochondria
Cells used for localization experiment Rice protoplasts and Nicotiana benthamiana leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28081268
Reference of localization https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1006157
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.126
NLS score -0.47
Protein Sequence >LOC_Os09g39960.1 protein
MASMEGLIGLMNRIQRACTALGDHGGGEGANLPTLWESLPTIAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHQIDKGAHDYAEFLHLPKT
RFSDFALVRQEIADETDRVTGKTKQISPVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPESVVHDIENMVRSYVEKPNCIILAISPANQDIATSDAIKL
SKEVDPSGERTFGVLTKLDLMDKGTNALDVLEGRAYRLQYPWVGIVNRSQADINRKVDMIVAREKEREYFENSPDYAHLASKMGSVYLAKLLSQHLEAVI
KARIPSITSLINKTIDELESELDTIGKEVAADPGAQLYTILELCRAFDRVFKEHLDGGRSGGDKIYGVFDHKLPAAFRKLPFDRYLSVQNVKKVVSEADG
YQPHLIAPEQGYRRLVEAGLAYFKGPAEATVDAVHVVLRDLVRKSIGETEPLRRFPTLQAAIATAANEALERFREDGRSTALRLVDMEAYLTVEFFRKLP
QDPDSGSKVGNNTNESNGSGSGSVTVDRYGDGHYRNIASNVSQYIKMVGDQLLHKIPKAVVHCQVREAKRSLLNHFYVHIGKKEASQFGHLLDEDPAMLE
RRQQCWKRLELYKSARDEIDSVAWTR

GO Analysis
1
GO Category Biological Process
GO Term response to stress
2
GO Category Biological Process
GO Term response to biotic stimulus
3
GO Category Cellular comBiological Processonent
GO Term cellular_component
4
GO Category Biological Process
GO Term catabolic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Biological Process
GO Term transport
7
GO Category Biological Process
GO Term cellular process
8
GO Category Molecular Function
GO Term hydrolase activity
9
GO Category Cellular comBiological Processonent
GO Term vacuole
10
GO Category Cellular comBiological Processonent
GO Term membrane
11
GO Category Biological Process
GO Term biological_process
12
GO Category Cellular comBiological Processonent
GO Term mitochondrion
13
GO Category Molecular Function
GO Term nucleotide binding
14
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants No