| RGAP LOCUS ID |
LOC_Os09g39550 |
| RAP-DB ID |
Os09g0568900 |
| Function |
expressed protein |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
6 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
1.687 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.04 |
4) Y-Loc
Prediction
|
| localization |
Mitochondrion |
| score |
|
| confidence value |
0.68 |
| Number Of Software Predicting Nucleus |
2 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
IF1-2 |
| Function assigned as per literature |
IF1-2 protein plays a regulatory role in mitochondria |
| Subcellular localization as per literature |
Mitochondria |
| Cells used for localization experiment |
Onion epidermal cells |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
10664124 |
| Reference of localization |
https://link.springer.com/article/10.1007/PL00008125 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
1 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.154 |
| NLS score |
-0.22 |
| Protein Sequence |
>LOC_Os09g39550.1 protein
MEAAARAPSRAAARFVQRRLFSSGGKVLGEEEKAAENVYIKKMEHEKLEKLAHKGPNPGEQASTAGAAANAVKTGSGSTESRSAGVSTDKNRNYAVLAGT
VAALSGLGWYLLSKPKKSEDIVD |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
vacuole |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleolus |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
mitochondrion |
|
| 5 |
| GO Category |
Molecular Function |
| GO Term |
binding |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| Presence of Splice variants |
No |
