LOC_Os09g38580

Expression Profile

RGAP LOCUS ID LOC_Os09g38580
RAP-DB ID Os09g0558300
Function cyclic nucleotide-gated ion channel, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 10

2) CELLO Prediction
localization PlasmaMembrane
score 4.415

3) NUCPRED Prediction
localization Non Nuclear
score 0.71

4) Y-Loc Prediction
localization Nuclear
score 83.96
confidence value 0.3
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) CDS1|OsCNGC9
Function assigned as per literature OsCNGC9 is a cyclic nucleotide-gated channel protein and positively regulates the resistance to rice blast disease.
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 31444468
Reference of localization https://www.nature.com/articles/s41422-019-0219-7
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.122
NLS score -0.47
Protein Sequence >LOC_Os09g38580.1 protein
MFGSRVQDEVEMQRRTTNRIFPDERQDQFKLPFQAARADRFGVNRIDAKTTEKIKVISEGNIPWHRRILDPGSSMVLMWNRVFLGSCLFALFIDPFFYYL
PLVHVLDESTNRSCIAKDRRLSITITVLRTFADLFYMLNIMVKFHTAYVDPKSRVLGKGELVLDLKKIQRRYLRTDFFIDLLATIPLPQVTVWIIMPSIK
NSDYNIRNTTFALVIMIQYIFRMYLIVPLSNQIIKAAGVVAKSAWLGAAYNLLYYMLASHITGAIYYLLSIERQITCWNQQCLNESCSFNFISCDNTGSS
SYLTWGKNTSIFDNCDPNRNSSANPPPFNYGMFSTALSKGAVSAPFLEKYFFCLWWGLLQLSSSGNPLQTSAYIAENTFAIAIGALSLVLFAQLIGNMQT
YLQSISKRLEEWRLRQRDMEEWMRHHQLPDELQDRVRRFVQVKWLATRGVEEESILQALPADIRRDVQRHLCLDLVRRVPFFSEMDYQLLDAICERLVSF
LCPERTYISREGDPVNEMLFVIRGKLESSTTNGGRSNFFNSIILRPGDFAGEELLTWALLPKTNVHFPLSTRTVQSLTEVEAFALRAEDLKFVANQFRRL
HSKKLQHTFRFYSHHWRTWAACFIQAAWRQHQRRKLAESLSRWESYSWWPEEHPPADKPKQEGTSSSTKTIAESAIAQMHKFASASRRFRADDTAIRRLQ
KPDEPDFSADHFD

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Biological Process
GO Term transport
3
GO Category Biological Process
GO Term cellular process
4
GO Category Molecular Function
GO Term nucleotide binding
5
GO Category Molecular Function
GO Term transporter activity
6
GO Category Molecular Function
GO Term protein binding
Presence of Splice variants YES