LOC_Os09g37330

Expression Profile

RGAP LOCUS ID LOC_Os09g37330
RAP-DB ID Os09g0545300
Function OsSAUR39 - Auxin-responsive SAUR gene family member, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 7

2) CELLO Prediction
localization Nuclear
score 1.82

3) NUCPRED Prediction
localization Non Nuclear
score 0.29

4) Y-Loc Prediction
localization Chloroplast
score 5
confidence value 0.14
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SAUR39
Function assigned as per literature OsSAUR39 acts as a negative regulator of auxin synthesis and transport in rice
Subcellular localization as per literature Cytoplasm
Cells used for localization experiment Tobacco BY2 cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 19700562
Reference of localization http://www.plantphysiol.org/content/151/2/691.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.129
NLS score -0.22
Protein Sequence >LOC_Os09g37330.1 protein
MPLQTIHKLKHQYTHNKSSSHQKKHTMINPKRLVHLAKKWQHMAALGRRRLTITGATKEGNLRCSSAIADKGHCIIYTADGERFGVPLTYLSTTVFGELL
RLSEDEFGFTGEEKITLPCEAAVMEYVMCLLRRKPSEEVEQAVVSSVVMPCNYKSSTSMVSVNLSQSLAIF

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Biological Process
GO Term response to endogenous stimulus
Presence of Splice variants No