LOC_Os09g37270

Expression Profile

RGAP LOCUS ID

LOC_Os09g37270

RAP-DB ID

Os09g0544800

Function

ATROPGEF7/ROPGEF7, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization

Nuclear

score

2) CELLO Prediction

localization

Chloroplast

score

2.205

3) NUCPRED Prediction

localization

Non Nuclear

score

0.56

4) Y-Loc Prediction

localization

Nuclear

score

73.27

confidence value

0.33

Number Of Software Predicting Nucleus

Seed Specific

Transcription factor category

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020)

OsRacGEF2

Function assigned as per literature

OsRacGEF2 may play a role in plant immunty.

Subcellular localization as per literature

Endoplasmic reticulum

Cells used for localization experiment

Rice protoplasts

NUCLEAR or Not Nuclear

NOT NUCLEAR

PMID

26251883

Reference of localization

https://www.tandfonline.com/doi/full/10.1080/15592324.2015.1044702

Is Subcellular localization evidence by author available ?

Sequence Analysis

Number of PAT4

Number of PAT7

Number of Bipartite

Basic residues %

0.114

NLS score

-0.22

Protein Sequence

>LOC_Os09g37270.1 protein
MASASEDDAGSERCCGSYSPSADVSESETSSDCSAPTTTTTTRRFASSSSRGVASSSSSSLLPTPPPSSAAAFFLSAKPAADLSEVDMMKERFAKLLLGE
DMSGSGKGVCTALAISNAITNLSATVFGELWRLEPMASARKAMWTREMDWLLSVADSIVELTPSIQELPDGGGQFEVMVPRPRSDLYMNLPALKKLDAML
LAMIDGFKETEFWYVDRGIVVDDSGGPFSSSSSSCGRPSVRQEEKWWLPCPRVPPKGLSEDARRKLQQDRDCANQILKAAMAINSDVLAEMEIPEVYLES
LPKSGKSCLGEIIYRYITAEQFSPECLLDCLDLSSEHHTLEVANRIEAAIHVWRLKGQKKSTPQAKSKKSWGGKVKGLVGDTEKSHVLSQRADGLLQSLR
LRYPGLPQTSLDMNKIQYNKDVGQSILESYSRVLESLAFNIIARIDDVIYVDDATKKSAAADSVSIFNRGIGVPVQKRISPSPFSIQHTPYASPFATPTF
CSSTPVTGSPGRVQPPLNKDNLPTKQEVKVEKLFSGDIEKVWTYAGNLSARKDAGDAPERD

GO Analysis

GO Category	Cellular comBiological Processonent
GO Term	plasma membrane

GO Category	Biological Process
GO Term	metabolic process

GO Category	Biological Process
GO Term	pollination

GO Category	Biological Process
GO Term	cellular component organization

GO Category	Biological Process
GO Term	anatomical structure morphogenesis

GO Category	Biological Process
GO Term	cell differentiation

GO Category	Biological Process
GO Term	cell growth

GO Category	Biological Process
GO Term	multicellular organismal development

GO Category	Molecular Function
GO Term	enzyme regulator activity

Presence of Splice variants

YES