LOC_Os09g36890

Expression Profile

RGAP LOCUS ID LOC_Os09g36890
RAP-DB ID Os09g0540500
Function hydroxyproline-rich glycoprotein family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 13

2) CELLO Prediction
localization Nuclear
score 3.223

3) NUCPRED Prediction
localization Non Nuclear
score 0.42

4) Y-Loc Prediction
localization Nuclear
score 81.95
confidence value 0.07
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMED4
Function assigned as per literature OsMED4 interacts with SAD1 and controls various aspects of plant development
Subcellular localization as per literature OsMED4 was colocalized with SAD1 in nucleus
Cells used for localization experiment N. benthamiana leaf cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 25404280
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/tpj.12725
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.077
NLS score 0.21
Protein Sequence >LOC_Os09g36890.1 protein
MMQSHHPSPARLGLTASSPSLPPNPAAGNPTSSPPQGNPSAAAAVGAAAAAAPTLTTSPSLLPLLPPLPRAQALLQLISALASNLFELSPSRAAWISAYR
GSLPTFLPSPSSAPPPPLPAPISSTKEALSLLNTLQTQLFEAVAELQETLDLQDARARLAREARAKDASILAFAKKLREAHHVLDRLVDDYADYRRDPKR
PRGAAAADDPEPVSDGDFGASLHSKLNLDDVLTYAHRISYTTFAPPEHGAGLPLRGALPPAPQENEMRMSQLYQFADLDVGVPKSQEAKERTAAEGDATP
LFQPSPTQEAAVLPITVPHPHGWRNGALPLEIPLPPPGWKPGDPITLPPDGILAGVKGEEPRASVQQMPVVVPAMVPKAQEPIQVRHVDLDINNSSSSDE
YSSDVGSSEEDDED

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Molecular Function
GO Term molecular_function
4
GO Category Cellular comBiological Processonent
GO Term nucleoplasm
Presence of Splice variants YES