| RGAP LOCUS ID |
LOC_Os09g36160 |
| RAP-DB ID |
Os09g0531600 |
| Function |
LRP1, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
14 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
3.642 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.38 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
72 |
| confidence value |
0.26 |
| Number Of Software Predicting Nucleus |
2 |
| Seed Specific |
No |
| Transcription factor category |
SRS |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsSHI1 |
| Function assigned as per literature |
OsSHI1 regulates plant architecture through modulating the transcriptional activity of IPA1 |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
Rice protoplasts |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
30914468 |
| Reference of localization |
http://www.plantcell.org/content/31/5/1026.long |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
1 |
| Number of PAT7 |
2 |
| Number of Bipartite |
0 |
| Basic residues % |
0.089 |
| NLS score |
0.47 |
| Protein Sequence |
>LOC_Os09g36160.1 protein
MAGFPLGGGSHSRDNPAPPVPPVHPADAASFLYATRGGSFQLWQQQEQQPFYASNIIRFADDAPPAPSLAGASSSSSSRGMRSSGGGGGGGGGGISCQDC
GNQAKKDCTHMRCRTCCKSRGFACATHVKSTWVPAAKRRERQQQLAALAASAAATAGGAGPSRDPTKRPRARPSATTPTTSSGDQQMVTVAERFPREVSS
EAVFRCVRLGPVDQAEAEVAYQTAVSIGGHVFKGILHDVGPEALAVAGGGGASEYHFRLTGDGSSPSTAAAGEAGSGGGGNIIVSSAVVMDPYPTPGPYG
AFPAGTPFFHGHPRP |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| 2 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
biological_process |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 10 |
| GO Category |
Biological Process |
| GO Term |
flower development |
|
| 11 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| Presence of Splice variants |
No |
