LOC_Os09g35000

Expression Profile

RGAP LOCUS ID LOC_Os09g35000
RAP-DB ID Os09g0521900
Function flap endonuclease, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 9.5

2) CELLO Prediction
localization Nuclear
score 1.729

3) NUCPRED Prediction
localization Non Nuclear
score 0.51

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.57
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsGEN-L|OsGEN1
Function assigned as per literature OsGEN-L plays a role in DNA metabolism required for early microspore development in rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 15792960
Reference of localization https://academic.oup.com/pcp/article/46/5/699/1841654
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.134
NLS score -0.22
Protein Sequence >LOC_Os09g35000.1 protein
MGVGGSFWDLLKPYARHEGAGYLRGRRVAVDLSFWVVSHSAAIRARSPHARLPHLRTLFFRTLSLFSKMGAFPVFVVDGQPSPLKSQVRAARFFRGSGMD
LAALPSTEAEASADALVQPRNAKFTRYVEDCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFLFGAKTVIKVLRSNCKEPFECYNMADI
ESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALRFVQLFDEDNVLAKLYEIGKGVYPFIGVSAPNIDDLPSPSTKSLPRARSPHCSHCGHPGNKKNH
IKDGCNFCLVDSLENCVEKPAGFICECPSCDKARDLKVQRRNENWQIKVCKRIAAETNFPNEEIINLYLNDDNLDNENGVPLLTWNKPDMEILVDFLSFK
QNWEPAYIRQRMLPMLSTIYLREMASSQSKSFLLYDQYKFHSIQRIKIRYGHPYYLVKWKRVTRSMISNDPPSKQTELEGKNDKVEVLDGDDEVVDEEEE
EPTMISETTELLDEPDVPQVLDDDKDCFLLTDEDIELVNAAFPDEAQRFQEEQRLKEAKSIARKSKLNVAGFETPKGPRPSGVQLSIKEFYRSKKGLSGD
SGKDGSRKSSDVDLSKNLPKSVRRRLLFD

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Molecular Function
GO Term DNA binding
3
GO Category Biological Process
GO Term response to stress
4
GO Category Biological Process
GO Term DNA metabolic process
5
GO Category Molecular Function
GO Term catalytic activity
6
GO Category Molecular Function
GO Term nuclease activity
Presence of Splice variants No