LOC_Os09g32540
| RGAP LOCUS ID | LOC_Os09g32540 | ||||
| RAP-DB ID | Os09g0502100 | ||||
| Function | expressed protein | ||||
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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| localization | Nuclear | ||||
| score | 14 | ||||
2) CELLO Prediction |
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| localization | Nuclear | ||||
| score | 3.532 | ||||
3) NUCPRED Prediction |
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| localization | Non Nuclear | ||||
| score | 0.44 | ||||
4) Y-Loc Prediction |
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| localization | Nuclear | ||||
| score | 99.11 | ||||
| confidence value | 0.96 | ||||
| Number Of Software Predicting Nucleus | 3 | ||||
| Seed Specific | No | ||||
| Transcription factor category | |||||
Experimental evidence for subcellular localization |
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| Published gene name (updated 1 January 2020) | LGD1 | ||||
| Function assigned as per literature | LGD1 pleiotropically regulated rice vegetative growth and development through both the distinct spatiotemporal expression patterns of its multiple transcripts and RNA binding activity | ||||
| Subcellular localization as per literature | cytoplasm and Nucleus | ||||
| Cells used for localization experiment | Onion epidermal cells | ||||
| NUCLEAR or Not Nuclear | NUCLEAR | ||||
| PMID | 22409537 | ||||
| Reference of localization | https://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1365-313X.2012.04989.x | ||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
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| Number of PAT4 | 0 | ||||
| Number of PAT7 | 2 | ||||
| Number of Bipartite | 1 | ||||
| Basic residues % | 0.094 | ||||
| NLS score | 0.54 | ||||
| Protein Sequence | >LOC_Os09g32540.1 protein MEGEEGRKGKEALSGGHLCHVCGYQYPNANPSAKLRRSHRKNCGKAPAADEREEGEEVDADMERNAGEGLLPVRAGGGESEGNAGSPSLGSARGDADLVE VKEIAERLKKAKSMAAFCSSVPPLERDRKLTWHSEMVLFWGTGVKSFVSFHAFIGNTFNEHASPNVTGVQVITGYCSEAGVINCASHSDEISKEVGRPAE REDSLDEYQDASPFLHQPDSEVGAAVAHKSDFSIEEIKNLDSVSPAASVAANEISVEMDGVSKDQLSGQPNMTNLSGESIVGKEVEPTVMLESSDEFSVN VHSDNTYIVDSKPDKTSEFIGDVNGSTSFISDLTSQSTSPIMVESLMEDSMDALHIISEVSPSLEEKAGSANAESVTENSRIDFVQTEDQLKLTNAVNTL TDCSSQYKCVKDTLDAQLPVENPFLGNSVCSLDGHQSDHVVTNMDSMWGSDDEDICSEGIKAKGSELGFSCEENPQHVELVDKADENPSVEKPNGLSEEV VCSKEIGPEVPIIGQVSASQHVALLMDQVSTKNPFILDDTRSDDLFELPTENYHSEAQNVAESKLQVDFTPLPLDQLIIVDQTSIAEGQQFVISGDRVPA ISSTCGNEPAVGTEDVSVSSTSDPAKNISLHDASVNNSRQEDGEPTSGINFVPSEVFLPAEFSTMPTSQDINALKNDGNEKTPLEDISTKDMTASLSEDN VEEKKETEGTSVKEMNSILKADNVEEEKLTDDTSAERNAMQHIDDAEKKQAADTVSRETSALQNIEERENVEGTGAKGVPAVGSLENADAENQTEDTSAK TECKSDNADNKKQSYDTSTEEMNAKNQAQDTSSKEMNTIQNTSNAEEKNQTEDPAVQEGNKQKEGISPTVAKQSSERVHVPLKVLLAEASVETKEKKTTA KERVLSFRRRVSKDDSSSAKSGSPKPGADDNKFWSSPARLPENNAEKKSKARKQPWMPFICCHSVH |
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GO Analysis |
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| 1 |
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| Presence of Splice variants | No | ||||