LOC_Os09g32080

Expression Profile

RGAP LOCUS ID LOC_Os09g32080
RAP-DB ID Os09g0494200
Function CHIT13 - Chitinase family protein precursor, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization vacu
score 4

2) CELLO Prediction
localization Extracellular
score 1.226

3) NUCPRED Prediction
localization Non Nuclear
score 0.3

4) Y-Loc Prediction
localization Mitochondrion
score
confidence value 0.18
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) bc15|OsCTL1
Function assigned as per literature bc15 is required for cellulose biosynthesis in rice
Subcellular localization as per literature Golgi body
Cells used for localization experiment Rice protoplasts cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 22665444
Reference of localization http://www.plantphysiol.org/content/159/4/1440.long#def-1
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.101
NLS score -0.04
Protein Sequence >LOC_Os09g32080.2 protein
MKRKTRNKIILTTLLVSAAAILIGGTVALILTAGTWKVKMKESREKICDKGWECSGSKYCCNDTITDFFKVYQFENLFSKRNSPVAHAVGFWDYQSFITA
AALFEPLGFCTTGGKQMQMMELCAFLGHVGSKTSCGFGVATGGPTAWGLCYNHEMSPKEDYCDKTNLQYPCVEGAEYYGRGAIPVFWNYNYGAAGDGIHE
DLLHHPEYLEQNATMAFMAAMWRWMTPMKKKQPSAHDVFVGNWKPTKNDTLAKRLPGFGATMNVLYGDQICGKGYIDDMNVIISHYQYYLDLMGVGREHS
GDNRDCAEQAAFNPSYKKPDDQQQQS

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term carbohydrate metabolic process
3
GO Category Biological Process
GO Term metabolic process
4
GO Category Biological Process
GO Term response to stress
5
GO Category Biological Process
GO Term response to abiotic stimulus
6
GO Category Biological Process
GO Term cellular process
7
GO Category Biological Process
GO Term biological_process
8
GO Category Cellular comBiological Processonent
GO Term cell
9
GO Category Biological Process
GO Term cell growth
10
GO Category Biological Process
GO Term secondary metabolic process
11
GO Category Molecular Function
GO Term hydrolase activity
12
GO Category Biological Process
GO Term response to endogenous stimulus
13
GO Category Biological Process
GO Term anatomical structure morphogenesis
14
GO Category Biological Process
GO Term cell differentiation
15
GO Category Biological Process
GO Term multicellular organismal development
Presence of Splice variants YES