LOC_Os09g32040

Expression Profile

RGAP LOCUS ID LOC_Os09g32040
RAP-DB ID Os09g0493700
Function no apical meristem protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 5

2) CELLO Prediction
localization Nuclear
score 2.668

3) NUCPRED Prediction
localization Non Nuclear
score 0.56

4) Y-Loc Prediction
localization Nuclear
score 95.57
confidence value 0.39
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category NAC

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsNAC42
Function assigned as per literature OsNAC42-NPF6.1 forms a signaling cascade as a strategy for high NUE and yield breeding in rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 31754193
Reference of localization https://www.nature.com/articles/s41467-019-13187-1
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.075
NLS score -0.47
Protein Sequence >LOC_Os09g32040.1 protein
MGMENPPLRWPPGFRFSPTDEELVLYFLKRRIATGRPTPYIADVDVYKSHPSHLPERSALRTGDKQWFFFSRMDRKYPNGSRASRTTGEGYWKATGKDRS
ICNGGGGGTASGRAVGSKKTLVYHHGRAPRGERSDWVMHEYTLLADALPPAARDREAYALYKLFHKSGAGPKNGEQYGAPFREEDWLDDDDHHHDQLPAE
AALPAPATTSGRAATTEEHADFELPGGDLDVLLAQIENDQDIIEAQLDFSTHVTSQVQIQHRVHQGWLSDDGGKSDVADATTSGSALLMAENTCAELPID
GLEQLLMQISDDQQTVEMLSGFSASVPQSQLQHDYHQGCLGVHREEVGVADSTTVSSAVVTEECTVRELQDIEGLLMQIENDQENAESLPDFSTPVHLHD
CHQAAFGDFQGSQRATFNIANLSTMVQESPNFDLQTGPSNQITESILTTEPMNGETNAVEETSPLRSMSVLGSYDRQDGDDEFLEINDFFDPEDLEQILG
STRSQNLIPADDGVFDSLQYSDAPMFLPGSFDRTGVVAENHYVEFGASGIQNQGFQHTTELLAHNQVALNVRNHMKDNHVVFSHSSDATIIHTVNEQPPN
RSSNASQSWFNGALSALLDSVPSSPAMAAENIGLNRTLQRISSFRSQQPAREEVSSTLINTRRRGGGLIFISLMVLLVAIMWTFSNGSAVKLSKGLWKFP
ST

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Biological Process
GO Term multicellular organismal development
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No