LOC_Os09g31390

Expression Profile

RGAP LOCUS ID

LOC_Os09g31390

RAP-DB ID

Os09g0489500

Function

transcription factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization

Nuclear

score

2) CELLO Prediction

localization

Nuclear

score

3.383

3) NUCPRED Prediction

localization

Non Nuclear

score

0.6

4) Y-Loc Prediction

localization

Nuclear

score

100

confidence value

0.97

Number Of Software Predicting Nucleus

Seed Specific

Transcription factor category

bZIP

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020)

OsTGA10

Function assigned as per literature

Acts as a mediator role between organ identity determination and tapetum development in rice stamen development

Subcellular localization as per literature

Nucleus

Cells used for localization experiment

rice protoplasts

NUCLEAR or Not Nuclear

NUCLEAR

PMID

29158333

Reference of localization

http://www.plantphysiol.org/content/176/1/819.long

Is Subcellular localization evidence by author available ?

Sequence Analysis

Number of PAT4

Number of PAT7

Number of Bipartite

Basic residues %

0.092

NLS score

0.02

Protein Sequence

>LOC_Os09g31390.1 protein
MMSGSESQQEREHRQQQEMNISFGMMMNHGHHHYGQHQQQHHHHPPPSSSSSSSMHAAAASFMSSKEASAGAYDHLGELDQALFMYLDHGSHAASHQEQR
QTLNIFPSQPMHVEPSPKGEISLVLSPAAVGTKMARSPDHHHHHQQQAAAAMEELATGSRRQDHHHLQHQPFAAEPAGINRDVKPVTAKKDHRRGVSTGE
RDPKTLRRLAQNREAARKSRLRKKAYIQQLESSRIRLAQLEQELHTARAQGVFFPGSGGLIGEGGSGKGVLLGGIDGVGGGGGGGLSSEAAMFDVEYGRW
QEEHHRLMYELRAALQQQLPEGELQVYVESCLAHHDEVAAIKDGAIRGDVFHLISGVWMSPAERCFLWLGGFRPSEVIKMLVAHVEPLTEQQIVGVYGLQ
QSALETEEALTQGLDALYQSLSDTVVSDALSCPSNVANYMGQMAVAINKLSTLEGFVRQAENLRQQTLHRLQQVLTTRQMARSLLAVSDYFHRLRTLSSL
WVTRPRHPPHDHQPPPHSAAPHT

GO Analysis

GO Category	Molecular Function
GO Term	DNA binding

GO Category	Biological Process
GO Term	signal transduction

GO Category	Biological Process
GO Term	biosynthetic process

GO Category	Biological Process
GO Term	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

GO Category	Biological Process
GO Term	protein modification process

GO Category	Molecular Function
GO Term	sequence-specific DNA binding transcription factor activity

Presence of Splice variants

YES