LOC_Os09g30400

Expression Profile

RGAP LOCUS ID

LOC_Os09g30400

RAP-DB ID

Os09g0481700

Function

WRKY90, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization

Nuclear

score

2) CELLO Prediction

localization

Nuclear

score

4.403

3) NUCPRED Prediction

localization

Nuclear

score

0.9

4) Y-Loc Prediction

localization

Nuclear

score

100

confidence value

0.89

Number Of Software Predicting Nucleus

Seed Specific

Transcription factor category

WRKY

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020)

OsWRKY80

Function assigned as per literature

an important positive regulatory circuit that is implicated in rice defense response

Subcellular localization as per literature

Nucleus

Cells used for localization experiment

onion epidermal cells

NUCLEAR or Not Nuclear

NUCLEAR

PMID

27888467

Reference of localization

https://thericejournal.springeropen.com/articles/10.1186/s12284-016-0137-y

Is Subcellular localization evidence by author available ?

Sequence Analysis

Number of PAT4

Number of PAT7

Number of Bipartite

Basic residues %

0.087

NLS score

-0.16

Protein Sequence

>LOC_Os09g30400.3 protein
MASSSDHGSLMEDWMPPPTPSPRTLMSSFLNEDFVSGSFSNIFSDHESNKPQDQFERNRELVDLSKEVPSQFARPAFQRDASLDHSLVSPTQRSNSHGGL
AERRAARAGFSVPKIDTSRGGSSTVIRSPVAIPPGLSPTTLLESPVFLYNAMAQPSPTTGTLPFLMASNAKSTIPSATKMDEDCTFGNDTFSFQPHVGSR
RPNFSAAEKGPNACHQNQSLSNIHQRESSLQSSFTAVKDITDEKNIKTKTSDSMFGDNHSSDEQDDETNQNGENSMPPPNHRSGVPLSHTNDPEVNVLEN
RGSQTCHNSASLWDNAKNDCLQDVQSEVIETRTAACLPVSTNCDTSIMESQDAVDVSSTLSNEEDDRATHGTASIECNGDGDETDSKRRKLDALTAATAA
ITTTSNIDMGAAASRGVREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHQGCSVRKHVERASHDLKSVITTYEGKHNHEVPAARNSGH
GSSGSGNAPSAPQSNGSQRRQEQGQASFSQFGGAAPFSSFVLPPRNQFGPSASNFPFGMVPPGMAIPMPSLGSLAPAKMAGHPSTMQGYQGLMIPEGEMK
TEPMSQLGFPAVNQSSSSFQQMMNRPPSFGPQM

GO Analysis

GO Category	Biological Process
GO Term	cellular process

GO Category	Biological Process
GO Term	biosynthetic process

GO Category	Biological Process
GO Term	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

GO Category	Biological Process
GO Term	reproduction

GO Category	Biological Process
GO Term	post-embryonic development

GO Category	Biological Process
GO Term	embryo development

GO Category	Molecular Function
GO Term	sequence-specific DNA binding transcription factor activity

Presence of Splice variants

YES