| RGAP LOCUS ID |
LOC_Os09g29460 |
| RAP-DB ID |
Os09g0470500 |
| Function |
homeobox associated leucine zipper, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
9 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
2.004 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.37 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
100 |
| confidence value |
1 |
| Number Of Software Predicting Nucleus |
2 |
| Seed Specific |
No |
| Transcription factor category |
HB/HD-ZIP |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
Oshox4 |
| Function assigned as per literature |
Oshox4 may be involved in the negative regulation of GA signalling and may play a role to fine tune GA responses in rice |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
onion epidermis cells |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
18049796 |
| Reference of localization |
https://link.springer.com/article/10.1007%2Fs11103-007-9270-8 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
1 |
| Number of PAT7 |
1 |
| Number of Bipartite |
0 |
| Basic residues % |
0.108 |
| NLS score |
0.18 |
| Protein Sequence |
>LOC_Os09g29460.1 protein
MKRPGGAGGGGGSPSLVTMANSSDDGYGGVGMEAEGDVEEEMMACGGGGEKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRR
ARWKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKAKLGDEEAAASFTSVKEEPAASDGPPAAGFGSSDSDSSAVLNDVDAAGAAPAATDA
LAPEACTFLGAPPAAGAGAGAAAAASHEEVFFHGNFLKVEEDETGFLDDDEPCGGFFADDQPPPLSSWWAEPTEHWN |
GO Analysis |
| 1 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 7 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 10 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| Presence of Splice variants |
No |
