LOC_Os09g29404

Expression Profile

RGAP LOCUS ID LOC_Os09g29404
RAP-DB ID Os09g0469400
Function glycogen operon protein glgX, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 8

2) CELLO Prediction
localization Extracellular
score 2.261

3) NUCPRED Prediction
localization Non Nuclear
score 0.05

4) Y-Loc Prediction
localization Cytoplasm
score 97
confidence value 0.88
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) ISA3
Function assigned as per literature ISA3 facilitates starch metabolism and affects morphological characteristics of plastids in rice.
Subcellular localization as per literature Chloroplasts
Cells used for localization experiment Arabidopsis protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 21551159
Reference of localization https://academic.oup.com/pcp/article/52/6/1068/1873136
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.106
NLS score -0.22
Protein Sequence >LOC_Os09g29404.1 protein
MFWFNLGNTLNCNHPVVKELILDSLRHWVEEYHIDGFRFDLASVLCRGPDGCPLDAPPLIKEIAKDAVLSRCKIIAEPWDCGGLYLVGRFPNWDRWAEWN
GKYRDDLRRFIKGDPGMKGVFATRVSGSADLYQVNERKPYHGVNFVIAHDGFTLCDLVSYNLKHNDANGEGGCDGCNDNFSWNCGVEGETNDLNVLSLRS
RQMKNFHVALMISQGTPMMLMGDEYGHTRYGNNNSYGHDTCINNFQWEQLEQRRDGHFRFFSEMIKFRHSNPILRRDRFLNKNDVTWHEDCWENQESKFL
AFTVHDHNSGGDIYLAFNAHDYFVDAVIPPPPHHKCWNRVVDTNLESPNDIVPEGVPFTGPKYRIAPYSSILLKAKP

GO Analysis
1
GO Category Molecular Function
GO Term hydrolase activity
2
GO Category Biological Process
GO Term generation of precursor metabolites and energy
3
GO Category Biological Process
GO Term carbohydrate metabolic process
4
GO Category Cellular comBiological Processonent
GO Term plastid
5
GO Category Biological Process
GO Term cellular process
6
GO Category Biological Process
GO Term catabolic process
Presence of Splice variants YES