| RGAP LOCUS ID |
LOC_Os09g29130 |
| RAP-DB ID |
Os09g0466400 |
| Function |
ZF-HD protein dimerisation region containing protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
8 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
3.458 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.16 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
68 |
| confidence value |
0.7 |
| Number Of Software Predicting Nucleus |
2 |
| Seed Specific |
No |
| Transcription factor category |
zf-HD |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsZHD1 |
| Function assigned as per literature |
OsZHD1 has key roles in rice morphogenesis, especially in the modulating of leaf rolling, which provided a novel insight into the molecular mechanism of leafdevelopment in rice |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
rice protoplasts |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
24385091 |
| Reference of localization |
https://link.springer.com/article/10.1007%2Fs00425-013-2009-7 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.104 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os09g29130.1 protein
MDFDDHDDGDEEMPPMPVSSSYETPPQHGLAGGGMAPKPPGEIGSRVKGPSCGGGRYRECLKNHAVGIGGHAVDGCGEFMAAGEEGTIDALRCAACNCHR
NFHRKESESLAGEGSPFSPAAVVPYGATPHHQFSPYYRTPAGYLHHHQHHMAAAAAAAAAAAGGYPQRPLALPSTSHSGRDDGDDLSGMVGPMSAVGPLS
GMSLGAGPSGSGSGKKRFRTKFTQEQKDKMLAFAERVGWRIQKHDEAAVQQFCDEVGVKRHVLKVWMHNNKHTLGKKLP |
GO Analysis |
| 1 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 4 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
reproduction |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
embryo development |
|
| Presence of Splice variants |
No |
