LOC_Os09g27890

Expression Profile

RGAP LOCUS ID LOC_Os09g27890
RAP-DB ID Os09g0452200
Function lysM domain-containing GPI-anchored protein precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 4

2) CELLO Prediction
localization Extracellular
score 2.201

3) NUCPRED Prediction
localization Non Nuclear
score 0.01

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.99
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) LYP4|OsLYP4
Function assigned as per literature LYP4 and LYP6 are promiscuous PRRs for PGN and chitin in rice innate immunity
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment rice protoplast cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 22872757
Reference of localization http://www.plantcell.org/content/24/8/3406.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.04
NLS score -0.47
Protein Sequence >LOC_Os09g27890.1 protein
MPPPLLLLLLLAAAAAAVAPARSKSTLESCSSSTACPALLSYTLYADLKLAELAALFSADPLAILAANSIDFAVPDPADRILPAGLPLRVPVPCACSDGI
RRVTTVRYVARPGDTLASVASSVYGGLTTPDWISDSNGILGAKPDAAVDAGTTLFVPLHCACFGGVDNGLPAVYLTYVAGKGDTVAAVAQRYRTTATDLM
SVNDMATPELAAGDIIVVPLPACTSSFPAFTADYGLAVANGTYAVTANRCVQCSCGPGNLDLFCVPAPLADSTCSSMQCANSSMMLGNFTLLMTSSGCSV
TSCSYGGFVNGTILTTLTTALKPQCPGPHQYPPLIPPPTSSFFETYLGPSPTPMASEGGVMAGMAPTSTPAASSGPPPAGRHVVGDVLGAFALCLVGNLL
W

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Biological Process
GO Term catabolic process
3
GO Category Cellular comBiological Processonent
GO Term plasma membrane
4
GO Category Cellular comBiological Processonent
GO Term membrane
Presence of Splice variants YES