| RGAP LOCUS ID |
LOC_Os09g26780 |
| RAP-DB ID |
Os09g0439200 |
| Function |
zinc-finger protein, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
12 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
1.965 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.34 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
7 |
| confidence value |
0.13 |
| Number Of Software Predicting Nucleus |
1 |
| Seed Specific |
No |
| Transcription factor category |
Tify |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsJAZ8|OsTIFY10c |
| Function assigned as per literature |
OsJAZ8 is involved in jasmonate-induced resistance to bacterial blight in rice |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
Transgenic rice root cells |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
23104764 |
| Reference of localization |
https://academic.oup.com/pcp/article/53/12/2060/1869466 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.108 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os09g26780.1 protein
MAGRATATATAAGKDRSSFAVTCSLLSQFLKEKKGGGGGLQGLGLGLRPAPAAPPAAGAGGAFRPPPTTMNLLSGLDAPAVEVEPNTAETAADELPLIKA
PADQQSDESASEAAGEKAQQLTIFYGGKVVVFENFPSTKVKDLLQIVSTGDGVDKNTGTAATQSLPRPAHNSLPDLPIARRNSLHRFLEKRKGRMNANAP
YQANCTAAPSKQANGDKSWLGFGQEMTIKQEI |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
flower development |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
response to biotic stimulus |
|
| Presence of Splice variants |
No |
