| RGAP LOCUS ID |
LOC_Os09g25070 |
| RAP-DB ID |
Os09g0417800 |
| Function |
WRKY62, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
11 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
2.624 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.35 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
99.94 |
| confidence value |
0.98 |
| Number Of Software Predicting Nucleus |
3 |
| Seed Specific |
No |
| Transcription factor category |
WRKY |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsWRKY62 |
| Function assigned as per literature |
|
| Subcellular localization as per literature |
Nuclear localization of OsWRKY76.1 and OsWRKY62.1 heteroduplex interaction; in the absence of interactor OsWRKY62 localized in non nuclear cytoplasmic bodies |
| Cells used for localization experiment |
Nicotiana benthamiana leaves |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
27208272 |
| Reference of localization |
http://www.plantphysiol.org/content/171/2/1427.long#F1 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
1 |
| Number of Bipartite |
0 |
| Basic residues % |
0.101 |
| NLS score |
-0.04 |
| Protein Sequence |
>LOC_Os09g25070.1 protein
MDDDGDGSSSPTDDSAAAGLLPLFSRSPAEDLEEKLRRAMEENARLTRALDAILAGHHAHQRALLAPSLSPPPPSATARAPSVSTSCAAREDAAPAVAAA
AASTACPSRQQPPTAEPRPKVRTVRVRADAADATDANSMAETVKDGYQWRKYGQKVTRDNPYPRAYFRCAFAPSCPVKKKLQRCAEDRSMLVATYEGEHN
HALSTQTTEFVASGCTTSQHAGGSSSSPLPCSISINSSGRTITLDLTNQAGSGSIASCGVEAAAVSGELVTVLSPELRRHLVEEVVQVLKNDAEFVEAVT
NAVAARVVDQIPHIPVHL |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
response to biotic stimulus |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 4 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
biological_process |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| Presence of Splice variants |
YES |
