LOC_Os09g24680

Expression Profile

RGAP LOCUS ID LOC_Os09g24680
RAP-DB ID Os09g0413300
Function pentatricopeptide, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 12.5

2) CELLO Prediction
localization PlasmaMembrane
score 2.595

3) NUCPRED Prediction
localization Non Nuclear
score 0.09

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.67
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPPR1
Function assigned as per literature OsPPR1 is required for the chloroplast biogenesis in rice
Subcellular localization as per literature Chloroplast
Cells used for localization experiment tobacco protoplast
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 16021404
Reference of localization https://link.springer.com/content/pdf/10.1007%2Fs11103-005-5702-5.pdf
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.095
NLS score -0.47
Protein Sequence >LOC_Os09g24680.1 protein
MPPRLLRSSTPLAAAHLRALSAFAPRAGEGAPHLFGGMRPRAPDLLARLPAELASFARARAAGRAAPSQFAYGNALAACARAPAPALAEQVYCAAWKDGL
SGNAYVCTGMVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNGEGGLAVEMFRDMVWGSCEPNSFTYSGALSACAAGEELSVGRAVHGLVLRRD
PEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACAQMSMVREASQIHGMVLKT
EMYLDCVVKEALISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFISGVSNHSLLRSVQLLRRMFHQGLRPNDKCYASVFSSVNSIEFGGQLHSSAIKEGF
IHGILVGSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSACNRPECLLKGKEVHGHTLRVY
GETTFINDCFISMYSKCQGVQTARRIFDATPRKDQVMWSSMISGYATNGCGEEAISLFQLMVAASIRIDSYICSSILSLCADIARPFYCKPLHGYAIKAG
ILSDQSVSSSLVKVYSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQLGVRPDTVVLVSVLSACSRNGLVEQGFNYFNSMRTA
YGVEPELQHYCCMVDLLGRSGRLAEAKYFVDSMPMKPDLMVWSTLLAACRVHDDTVLGRFVENKIREGNYDSGSFATLSNILANSGDWEEVARIRKTMKG
VNKEPGWSMV

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term mitochondrion
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No