LOC_Os09g24220

Expression Profile

RGAP LOCUS ID LOC_Os09g24220
RAP-DB ID Os09g0407600
Function MSH-like DNA mismatch repair protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 6

2) CELLO Prediction
localization Nuclear
score 3.447

3) NUCPRED Prediction
localization Nuclear
score 0.86

4) Y-Loc Prediction
localization Nuclear
score 98.34
confidence value 0.77
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMsh6
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.125
NLS score 0.69
Protein Sequence >LOC_Os09g24220.1 protein
MASPSSRRLSNGRSPLLRKQSQITAFFSSPTAKPSPSPLNPRATKPPLAVPSPPPPNPPSPPQEEETAVGRRLRVYWPLDDAWYEGRVEGYDVGSRRHRV
RYDDGEEEVVDLASERYEWAAAADEEEVTPQPSRKLRRLRRMSDAATAKSPGAVDGGGGGDETADSAEEEDEDWKNDAAAENDSEEVELDDEEDDEEEVV
AVKTRKGKKNNPLSTSASTPKLASGLGSASISGSTLSKKRRKVDAGALDCAKKFSFEPANTTGKVELKVPISCSQREQPLENALTALTGEVAERFAQRQA
EKFKFLGEGRKDAKGRRPGNPNYDPRTLSLPSQFLNSLTGGQRQWWEFKSQHMDKVLFFKYTAVTAQSSFCFNSYGITGDKPHCGFPEKNFELNLEKLAK
KGYRVLVIEQTETPEQLDLRRKETGVKDKVVRREICAMVTKGTLTEGESLLANPDPSYLFSVAESYQCGSEKDQDGHTIGVCIVDVSTSKFIVGQFQDDA
ERHGLCSILSEIRPAEIIKPAKMLSPETEKALKSNTRDPLINNLLPSMEFWDAEKTIHEIKQYYCSLDTPGAGAQISSAYLPELLSELIEAGDKTYALSA
LGGSLFYLRQSLLDEKLLPCAEFERLTCSGLTNPIRKHMILDAAALENLEILENARNGGLSGTLYAQLNHCVTGFGKRLLKRWIARPLYERQAILQRQSA
IATFKGSGHECAIQFRKDLSRLPDMERLLARLFSSCDKNGRSSKSVVLYEDASKRLLHQFTAALRGCQQMFQACSSISMLTSTDGSSLLNDLLSLGKGLP
HVSSILDHFRDAFDWSEADRNGRIIPHEGCDPQYDAACIAIEEIESSLQKYLKEQRKLLSDSSVKYVDVGKDTYLLEVSENLRGSVPHNYELQSTKKGFY
RYWTPEVKELISELSKAEAEKEAKLKCILQNLIQLFVEHHSKWRQLVSVVAELDVLISLAIASDFFEGPTCCPIIKESYGPDDTPTLHARNLGHPTLRSD
SLGSGSFVPNDIKMGGPGNASFIVLTGPNMGGKSTLLRQVCLTIILAQIGANVPAESFELSLVDRMFVRMGARDHIMAGQSTFLVELMETASVLSSATKN
SLVALDELGRGTSTSDGQAIAASVLEYLVHHVQCLGLFSTHYHRLAAENKDSKVSLCHMACEISKGEGGLEEVTFLYKLTPGSCPKSYGVNVARLAGIPA
SVLQRANEKSSDFEASYGKRPGITKNKPSCAQEDKFAAIKDLFRVVKAMHHREDHASSLGMLHEVQKRAKVQVIGE

GO Analysis
1
GO Category Biological Process
GO Term response to stress
2
GO Category Biological Process
GO Term DNA metabolic process
3
GO Category Biological Process
GO Term cell cycle
4
GO Category Cellular comBiological Processonent
GO Term plastid
5
GO Category Biological Process
GO Term response to abiotic stimulus
6
GO Category Cellular comBiological Processonent
GO Term nucleus
7
GO Category Molecular Function
GO Term DNA binding
8
GO Category Biological Process
GO Term catabolic process
9
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
10
GO Category Molecular Function
GO Term hydrolase activity
11
GO Category Biological Process
GO Term cellular component organization
Presence of Splice variants No