LOC_Os09g24200

Expression Profile

RGAP LOCUS ID LOC_Os09g24200
RAP-DB ID Os09g0407200
Function RAD23 DNA repair protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 5

2) CELLO Prediction
localization Nuclear
score 1.751

3) NUCPRED Prediction
localization Non Nuclear
score 0.28

4) Y-Loc Prediction
localization Cytoplasm
score 80
confidence value 0.09
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) osRAD23
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.051
NLS score -0.47
Protein Sequence >LOC_Os09g24200.1 protein
MKISVKTLKGSTFQIEVDSAQKQVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQ
TVPAAPASQAPVAPATTVPVTVSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSG
VPEQMDIPVPPPSIQPANPTQASQATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQI
LQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDDEGPP

GO Analysis
1
GO Category Molecular Function
GO Term protein binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Molecular Function
GO Term DNA binding
4
GO Category Biological Process
GO Term response to stress
5
GO Category Biological Process
GO Term response to abiotic stimulus
6
GO Category Cellular comBiological Processonent
GO Term cytosol
7
GO Category Biological Process
GO Term DNA metabolic process
Presence of Splice variants YES