| RGAP LOCUS ID |
LOC_Os09g23730 |
| RAP-DB ID |
Os09g0402100 |
| Function |
HMG-Y-related protein A, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
14 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
3.071 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.32 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
84.03 |
| confidence value |
0.62 |
| Number Of Software Predicting Nucleus |
3 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
PF1 |
| Function assigned as per literature |
|
| Subcellular localization as per literature |
NA |
| Cells used for localization experiment |
|
| NUCLEAR or Not Nuclear |
|
| PMID |
|
| Reference of localization |
|
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
6 |
| Number of Bipartite |
0 |
| Basic residues % |
0.15 |
| NLS score |
1.68 |
| Protein Sequence |
>LOC_Os09g23730.1 protein
MATEEDASTMAAAEADPKPAATPSYPEMILAAIEALDDRNGSNKTAISQHIEGKYEGLLPPAHPSLLTAHLARMKQTGELAFSKNNYFRGDDPSLPPKRG
RGRPPKPKDAAAAAAAPAPAPAAPAASSPRPRGRPPKPKDPLAEAVAKATSGMPRARGRPPKKAKVEQEDPIGAPAAASAPAAAAEAAPPVKRGRGRPPK
VRPAAPVGEPAAA |
GO Analysis |
| 1 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytosol |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
cellular component organization |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
DNA metabolic process |
|
| Presence of Splice variants |
No |
