LOC_Os09g23200

Expression Profile

RGAP LOCUS ID LOC_Os09g23200
RAP-DB ID Os09g0395300
Function KANADI1, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 9

2) CELLO Prediction
localization Nuclear
score 4.018

3) NUCPRED Prediction
localization Non Nuclear
score 0.29

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.48
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category G2-like

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) RL9|SLL1|AH2|OsADD1
Function assigned as per literature AH2 plays an important role in the determination of hull epidermis development, palea identity, and grain size.
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 31357245
Reference of localization https://onlinelibrary.wiley.com/doi/pdf/10.1111/tpj.14481
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.081
NLS score -0.47
Protein Sequence >LOC_Os09g23200.1 protein
MAMVRELELMTSWSNSMGRHRYPTRILVDSFGHKCSASDKGVWTSCSIRAPLQGRGSFRRGANIRFGSLPSSAAVATSGGGRGGGGVVVGGGGGDPWRRL
DGSTASTELSLSPPPAQAAGGGGGGGGADALPWRHRPSPPSSAVATTSAAAAAALMAPMMLQPLDAGGGASAPPPPIRGIPIYNGPGGFPFLQPSPTAGD
VGHHHHHHPKMGFYSSYHHPSTWPSTSPSPLAAPPGAASSPLDPTAAFLSSPHHRMLSAASGRLNGMLSVSDTLRSYGVPGAAAPGVIGGAHHHHHHLHG
GQPFVGALASRFMPKLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDKPAASSGPADGGSGDEE
FAGGGQAASGGGDSMCLRGGGGGGVAAAAFAEHGRSASEGAASSVGGGGGGDMDQSSAGNTSTTRWSNSSRDPWLSSNSCNMDAHRSVGLSSPIENLEPC
RSSSSQVSNHELSSPSLEFTLGRPDWHGADHD

GO Analysis
1
GO Category Biological Process
GO Term multicellular organismal development
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Biological Process
GO Term flower development
6
GO Category Biological Process
GO Term cell differentiation
7
GO Category Biological Process
GO Term anatomical structure morphogenesis
8
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No