LOC_Os09g21250

Expression Profile

RGAP LOCUS ID LOC_Os09g21250
RAP-DB ID Os09g0380200
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 10.5

2) CELLO Prediction
localization PlasmaMembrane
score 4.569

3) NUCPRED Prediction
localization Non Nuclear
score 0.5

4) Y-Loc Prediction
localization Mitochondrion
score
confidence value 0.35
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) YLC1|OsV5A
Function assigned as per literature YLC1 protein is involved in Chl and lutein accumulation and chloroplast development at early leaf development in rice.
Subcellular localization as per literature Chloroplast
Cells used for localization experiment rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 23053539
Reference of localization https://link.springer.com/article/10.1007/s00425-012-1756-1
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 2
Number of Bipartite 1
Basic residues % 0.13
NLS score 1.13
Protein Sequence >LOC_Os09g21250.1 protein
MQATAALFLVRPLPRPHYRCLHGLRGGVSLAPPRRRLVARGPRCSMSLSIGGGAGAGAGGDRGFSYEHVPVFPRYRIRDPYKLLGVDRDAAEEEIRSARN
FLIQQYAGHEPSEEAIEGAYEKIIMKSYQQRKKTKINLKTKLKKRVEESPSWVKALLGYFEVPQMDIISRRLFFFAFIAGWSIATSAENGPAFQLAISLF
SCIYFLNDKMKNLMRASTTGFGVLVGGWIIGSLLVPLIPTFIIPPSWSLELLTSLVAYVFLFLGCTFLK

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term plastid
2
GO Category Biological Process
GO Term cell death
3
GO Category Cellular comBiological Processonent
GO Term mitochondrion
Presence of Splice variants No