LOC_Os09g19850

Expression Profile

RGAP LOCUS ID LOC_Os09g19850
RAP-DB ID Os09g0363100
Function chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 14

2) CELLO Prediction
localization Nuclear
score 3.207

3) NUCPRED Prediction
localization Nuclear
score 0.95

4) Y-Loc Prediction
localization Nuclear
score 64.47
confidence value 0.05
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) AL2
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.148
NLS score 0.77
Protein Sequence >LOC_Os09g19850.1 protein
MALLFPPPPHALSPKPPFPSTLRSTRSLRLRRATAAAAAAGAGVSSSSPSTSSPEKAPALDVASGKRGGKKRRSLKPSFEKQAIRRWSARAPSQRASFPW
QQQQQQQQPGGGEGEAAGDQESGWSGSSTLQSIVDYFDFDYDSSDGDGDGDGDGVVVGGEAAEAQEDGPRPEPSFLLGSRPVSAPWMHGEEEPMTNQLVS
DEEGLDGDGASEDEMGLVDGDGDEDEDLGSEEETLSESSDGEFSEDYAAPAANSSSMMDSVLDHVSSGGGFYRGTRRSSVNSIVNTMRNSMEESSRNAAI
ECPETEDFVQKLGPVLLPWEREGDVDRPRKRSNTELAERTIPEHELRRLRDVALRMKERMRVGPGGVTQLIVESIHQKWRVEEVVKLRFEGPPSLNMKRT
HDILEERTGGIVIWRSGRSVVLYRGMNYNLRCVQSYTQTTEVNFDKRVSSNSVEPIHVEHKFQKSGADGLNRSAYIVNSSEKPTETFDIDSFLDQLGPRY
KDWSGRGPIPVDADLLPGVVPGYKTPFRLLPYMVKSTLRNKEMTALRRLARQTAPHFALGRNREHQGLATAIVKLWEKSSIAKIAIKRGVPNTCNDRMAE
EIRKLTGGVLLSRNKEYIVFYRGNDFITPKVRQVLVEKQEQAITWQDEEELARLKASASISVKPKVFKNPPVAGTLAETREAKSRWGDSINAELRKKEKN
HMILTKHTSLLRNLKRKLILAKTKVIKAEKALAKVQEFLSPAELPTDLETVTDEERFLLRRIGLKMKAFLMLGRREVFDGTVQNMHLHWKHRELVKVLVK
GKSFPQVKHIAISLEAESGGVLISVDKTTKGYAIILYRGKNYKTPQILKPRNLLSRRKALARSIELQRREGLNHHISNLRDKIWKLKSQLVRMQVAGEKP
DAELLQTVEADLSKDDDKIEDEGEEAYLQTYISEDEEEPEDDQNEYL

GO Analysis
1
GO Category Molecular Function
GO Term RNA binding
2
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No