LOC_Os09g19734

Expression Profile

RGAP LOCUS ID LOC_Os09g19734
RAP-DB ID Os09g0361400
Function isochorismate synthase 1, chloroplast precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 7

2) CELLO Prediction
localization Cytoplasmic
score 1.588

3) NUCPRED Prediction
localization Non Nuclear
score 0.12

4) Y-Loc Prediction
localization Chloroplast
score 6
confidence value 0.32
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) ICS1|OsVDAC1|OsICS1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.098
NLS score -0.47
Protein Sequence >LOC_Os09g19734.1 protein
MVGPGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQ
RSGKFELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASYYHIVNHSATAVGAEL
THSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASALLQHEWRPKSVWTISAEVDTKAIDKSSKVGRWVQRPSCSLSMNGCGAAVAGAGAVAVRETRAL
PAAGAAGDAVGQLREAVAALEAADPPASPSGIIRIEVPVRQRGDAVEWLHAQGDLRARCFFSARAAAPLPECPALAIASAGNGNGNGAGGVGGEQRQRPV
SVAGVGSAVFFRGTEPFSLRDWRAIKRFLPRDCPLIRAYGAIRFDATSDHSVEWEEFGSFYFIVPQVEYNELEESSVLATTIAWDDSLSWTWQNAVKELQ
STLQKISSSPIKVNNSTLQTTILNLNHVPTKASWDLAVTKALQMIKGKQRELVKVVLARCSRYITDTCIDPVELLACLKVEGQNAYQFCIQPPDAPAFVG
NSPEQLFHRKYLNISSEALAGTRARGKTRADDFQIGQDLLLSSKEDNEFTIVRDSIKKKLEMICDDVVVHPSKALRKLPRVQHLSAQLAARMRNEDDEFD
ILNTLHPSPAVCGLPTEEARQFIQDYEIFDRGMYAGPVGWFGGAESEFAVGIRSALLGKGHSTLVYAGAGIVEGTNPSFEWDELDLKASQFAKLLQYQEQ
HICLQEAENMGTVI

GO Analysis
1
GO Category Biological Process
GO Term response to stress
2
GO Category Biological Process
GO Term response to biotic stimulus
3
GO Category Biological Process
GO Term cellular process
4
GO Category Molecular Function
GO Term catalytic activity
5
GO Category Cellular comBiological Processonent
GO Term plastid
6
GO Category Biological Process
GO Term biosynthetic process
Presence of Splice variants YES