LOC_Os09g14610

Expression Profile

RGAP LOCUS ID LOC_Os09g14610
RAP-DB ID Os09g0315050
Function DCL2, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 5

2) CELLO Prediction
localization Nuclear
score 1.764

3) NUCPRED Prediction
localization Non Nuclear
score 0.32

4) Y-Loc Prediction
localization Nuclear
score 97.13
confidence value 0.37
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsDCL2b
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.116
NLS score -0.47
Protein Sequence >LOC_Os09g14610.1 protein
MKYVGIIHLNQEQVIIARRFQTTILSFLIGDDHLEVSNGIKYFHEMQVPIGVVYLLLPLVSGRIDWCSMKFSSSPIYEANNKHMTHCHSCRDIDLLQTKD
GPFCRCILKNSIVCTPHNNIFYVISGFLDLDANSRLPQHDGTVVTYKDYFKTRHGLTLTFENQPLLAGSKHVKVRNFLHNYYYKKEKEPGDRYSVELPPE
LCRIIMSPVSANNLHIFSYVPSIMFRIQCMLLSVKLKVQLGPTVQQFDVPVLKILEALTTKKCQEEFSQESLETLGDSFLKYVTTRHLFSEYRLQHEGIL
TKMKKNLISNAALCQLACSSNLVGYIHAEEFNPRDWIIPCLDYDERGNKKISFLAPNGMYSQRKMSIKSKRIADSVEALIGAYLSTAGEKAAFLLMKSLG
MNIEFHTEIPVERKISMKAEEFIDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVN
NNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGL
QEFCDRRSFKITYEKNHVDGVSSVIARVKAGETTYSATKSGPCKLAKKLASKAVLKDLIAGHKDTEAAAV

GO Analysis
1
GO Category Biological Process
GO Term regulation of gene expression, epigenetic
2
GO Category Biological Process
GO Term DNA metabolic process
3
GO Category Molecular Function
GO Term RNA binding
4
GO Category Biological Process
GO Term metabolic process
5
GO Category Molecular Function
GO Term nuclease activity
6
GO Category Molecular Function
GO Term nucleotide binding
7
GO Category Biological Process
GO Term response to stress
8
GO Category Biological Process
GO Term response to biotic stimulus
9
GO Category Cellular comBiological Processonent
GO Term intracellular
10
GO Category Molecular Function
GO Term hydrolase activity
11
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
12
GO Category Molecular Function
GO Term nucleic acid binding
13
GO Category Molecular Function
GO Term protein binding
14
GO Category Biological Process
GO Term catabolic process
Presence of Splice variants YES