LOC_Os09g13940

Expression Profile

RGAP LOCUS ID LOC_Os09g13940
RAP-DB ID Os09g0309700
Function AP2 domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 6

2) CELLO Prediction
localization Nuclear
score 3.624

3) NUCPRED Prediction
localization Non Nuclear
score 0.51

4) Y-Loc Prediction
localization Nuclear
score 99.96
confidence value 0.91
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category AP2-EREBP/ERF

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsERF109
Function assigned as per literature OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment rice protoplast
NUCLEAR or Not Nuclear NUCLEAR
PMID 27040682
Reference of localization https://link.springer.com/article/10.1007%2Fs00709-016-0960-4
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.135
NLS score 0.13
Protein Sequence >LOC_Os09g13940.2 protein
MMVPSSRKVRVFCSDPDATDSSDEDDQNKKERRFSREILIPMENSKASKPVKTLVQCGTKTVKDSEKEPTSKYRGVRRRAWGKWAAEIRDPVRKSRKWIG
TFNSEEEAAAAYLAQSNQFHEELMALKIQSSVSEQEDLSSSVTISCVSSSQSCDQKIQAKPQEHKRVSVVVNRETVEQKFKAQPQAQKIKAQPEVQKRVS
VKISHETEDEHLLNLPSTPKGKEISMGAVLGRIDEIPVSNCVGHIDEFPPDDFTRLADAFPVSDFIGMADVPLGDDYIGLADISHLPLPITDLKFDLNAE
LNWDGFDFASLEQELNCL

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES