LOC_Os09g13740

Expression Profile

RGAP LOCUS ID LOC_Os09g13740
RAP-DB ID Os09g0307800
Function SET domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 5

2) CELLO Prediction
localization Nuclear
score 3.343

3) NUCPRED Prediction
localization Non Nuclear
score 0.69

4) Y-Loc Prediction
localization Nuclear
score 97.73
confidence value 0.51
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category SET

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SDG724|lvp1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 4
Number of PAT7 2
Number of Bipartite 1
Basic residues % 0.15
NLS score 1.8
Protein Sequence >LOC_Os09g13740.1 protein
MIGRYGHPPNPLLLLRPHLASFLRRLPPLRHCSLAYGLELVADPRHRRDLCLPPMPRPAKIRKKHENVFDQLIKAIKAPVDFDLPPVLKEWKSNYYVPIK
RNAYITRKRVEDDGIFCSCTPSGSSATCDKDCQCGMLFSCCSSTCKCENKCANKPFQHRTLRKTKLIKTEKCGNGVVAEEDIKKGEFVIEYVGEVIDDRT
CEQRLWKMKRQGDTNFYLCEVSSNMVIDATNKGNMSRFINHSCEPNTEMQKWTVEGETRVGIFALRDIKTGEELTYDYKFVQFGADQDCHCGSSNCRKML
GITKPVNSIVLHNGNLSQDQHVRKKRKTYLENCIGEIVRLWHRRHSMYLAASIYDFNERNGIHTLLFTDATIEEFDLREEDWDFLPDPDGPEEV

GO Analysis
1
GO Category Molecular Function
GO Term transferase activity
2
GO Category Cellular comBiological Processonent
GO Term endoplasmic reticulum
3
GO Category Cellular comBiological Processonent
GO Term cellular_component
4
GO Category Biological Process
GO Term biological_process
5
GO Category Biological Process
GO Term protein modification process
Presence of Splice variants YES