LOC_Os09g12770

Expression Profile

RGAP LOCUS ID LOC_Os09g12770
RAP-DB ID Os09g0299200
Function Myb-like DNA-binding domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 4.579

3) NUCPRED Prediction
localization Non Nuclear
score 0.52

4) Y-Loc Prediction
localization Nuclear
score 99.99
confidence value 0.96
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category G2-like

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsROC1|OsMYBc
Function assigned as per literature OsMYBc regulates OsHKT1;1 expression and probably the expression of other OsHKTs, playing an important role in salt tolerance
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 25991736
Reference of localization http://www.plantphysiol.org/content/168/3/1076.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.115
NLS score -0.47
Protein Sequence >LOC_Os09g12770.1 protein
MELGGNNMGPDNGANNNSNLAARQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQKYRLAKYIPDSSADGNKAENKDPGDLL
AGLEGSSGLQISEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLGGVKSETPAAGASVTLPSDQFPDSERTDPSTPAPTSESPTQGVP
SNRDNGGQNEATKSPQRDDSLSRHEPLTPDSNCQPGSPTASPKHERAAKRQRGNGAEFSETDFALPHSIFESSSGSEFQQCSMSYSGH

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES