LOC_Os09g12750

Expression Profile

RGAP LOCUS ID LOC_Os09g12750
RAP-DB ID Os09g0299000
Function Myb-like DNA-binding domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 2.155

3) NUCPRED Prediction
localization Non Nuclear
score 0.43

4) Y-Loc Prediction
localization Nuclear
score 99.79
confidence value 0.82
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category G2-like

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPHL3
Function assigned as per literature OsPHL3 delayed flowering time by down-regulating the expression of Hd3a and RFT1 through promoting Hd1 under long-day conditions (LDs), or suppressing Ehd1/Hd1 under short-day conditions (SDs)
Subcellular localization as per literature Nucleus
Cells used for localization experiment protoplasts isolated from 14-d-old rice seedlings
NUCLEAR or Not Nuclear NUCLEAR
PMID 30081823
Reference of localization https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-018-1382-6
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.128
NLS score -0.13
Protein Sequence >LOC_Os09g12750.1 protein
MFPPGLIHHRPDGGEAGRAAGGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEASEQSK
DASYLLDAQGGMSVSPRVSTQDVKENQEVKEALRAQMEMQRRLHEQVEVQKHVQIRMEAYQKYIDTLLEKACKIVSEQLASSGFSISDNDLPELSGGVMC
GSADTLSSSIFHQLSVSPINLHSPEGKPTPSGIEGQMILQKSPELKRKSC

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES