LOC_Os09g12730

Expression Profile

RGAP LOCUS ID LOC_Os09g12730
RAP-DB ID Os09g0298700
Function RNA recognition motif containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 10.5

2) CELLO Prediction
localization Nuclear
score 4.045

3) NUCPRED Prediction
localization Non Nuclear
score 0.77

4) Y-Loc Prediction
localization Nuclear
score 99.97
confidence value 0.86
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRRM
Function assigned as per literature OsRRM is involved in the regulation of cell development in rice endosperm
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epithelial cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 17486123
Reference of localization https://www.nature.com/articles/cr200743
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.106
NLS score -0.22
Protein Sequence >LOC_Os09g12730.1 protein
MGRPRGRGGGGGGGRGRFGGGGGSRFSAARDDPPPRRSSSGWGVAPPSRHLWVGSLSPGVAAADLSELFLRCGDVEGISRDPGRSFAFVTFAREEDAVAA
VRELQGIHLRGAPIRIEFSKGDKGSSSSMDDRYSQHADQRRFTERGRNQQSSPEKSTDKSKRSRPAEPSEVLWIGFPVGLKVDEATLWEAFSPFGEVVKI
TTFPGRTYAFVQYTTIAAACRAKETLQGNIFNNPRVSICFSRSDSVSAEFGKGSLDAPYSPHLNSSVRPIFREQDFEDFPRARPFDSPPRDMYMPSPHYG
PKRLSRDHDDVGFSRDNYLRYGPGVEPDPRSNFEPFRIQGLGPERRMSEDPYEQHRRSPAGDAPWHNIPFERSQGALPLEDSRYAREDPYPFSKKLRTGE
AHDSELPEYPFSEFDRGKVGSAYPRRPFYGVPDDDIHPRGYQLAPMHGRNHVDPLRNPTPLVDRHIPGHAQDSFSRHVEVERSTPEYHEPLLKEEWKWDG
TIAKGGTPICRARCFPVGKVLNFMLPEFLDCTARTSLEMLSKHYYQAASSWVVFFVPENDADMAAYNEFMNYLGDKQRAAVCKLGERSSLFLVPPSDFSE
QVLRVPGKVSISGVILKFEQSDPEVSSPTRKPETFVSHLNHDVRAHEDLDALRRINPPDIRPLPQGSDYLGLSPGSYNPASAHLVPPYKFGNAPSYLESE
LAHQKHPPDSHREIAHDKQQQHPDVLPSRWSDNIYNPSPGSGNLNYLAESAIPHTSTDRTPEAYSFAPQGVPKVSTSGYAPVADEASNMSYPPMQPASQQ
VVRPQQPPSLPLSLPPEQLAQLATLLAQQNQPGKEPVDSLNKESGFIRNPHGHSSMMPHSSGSIPVQNSLPPAPPSASQLQVHAPPVQGSVPPNPSIMHT
PNAPMPSHNTLPLPPMHPSGNPAHSSMPLRSFVPPLPEGPPPLRQHTSSALQAQPALPSGPQTSQQPSAQEDHHGDPQKRLQATLQLAATLLQQIQQQSK
PGGQK

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Molecular Function
GO Term RNA binding
3
GO Category Molecular Function
GO Term nucleotide binding
4
GO Category Biological Process
GO Term biological_process
5
GO Category Molecular Function
GO Term nucleic acid binding
Presence of Splice variants YES