| RGAP LOCUS ID |
LOC_Os09g12660 |
| RAP-DB ID |
Os09g0298200 |
| Function |
glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
12 |
2) CELLO
Prediction
|
| localization |
Chloroplast |
| score |
2.505 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.32 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
1 |
| confidence value |
0.94 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsAPS1|OsAGPS1 |
| Function assigned as per literature |
OsAGPS1 encodes small subunit of the enzyme ADP-glucose pyrophosphorylase (AGP) and may play an essential for starch synthesis in the seed endosperm of rice |
| Subcellular localization as per literature |
Plastid |
| Cells used for localization experiment |
Rice callus |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
17406793 |
| Reference of localization |
https://link.springer.com/article/10.1007%2Fs11103-007-9153-z |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
1 |
| Number of PAT7 |
1 |
| Number of Bipartite |
0 |
| Basic residues % |
0.11 |
| NLS score |
0.18 |
| Protein Sequence |
>LOC_Os09g12660.1 protein
MAMMAMGAASWAPIPAPARAAAAFYPGRDLAAARRRRGAAARRPFVFTPRAVSDSRSSQTCLDPDASTSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN
YRLIDIPVSNCLNSNVSKIYVLTQFNSASLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVMEFLILAGDHLYRMD
YQKFIQAHRETNADITVAALPMDEERATAFGLMKIDDEGRIIEFAEKPKGEKLKSMMVDTTILGLDTERAKELPYIASMGIYVFSKDVMLKLLRQNFPAA
NDFGSEVIPGATEIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAAIYTQPRYLPPSKVLDADVTDSVIGEGCVIRHCTINHSVVGL
RSCISEGAVIEDSLLMGADYYETETDKKALSETGGIPIGIGKNAHIRKAIIDKNARIGENVKIINVDNIQEASRETDGYFIKSGIVTVIKDALIPSGTVI |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
extracellular region |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 3 |
| GO Category |
Molecular Function |
| GO Term |
transferase activity |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
reproduction |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
carbohydrate metabolic process |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 10 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytoplasm |
|
| 11 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| Presence of Splice variants |
YES |
