LOC_Os09g12150

Expression Profile

RGAP LOCUS ID LOC_Os09g12150
RAP-DB ID Os09g0292900
Function OsFBX310 - F-box domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 10

2) CELLO Prediction
localization Chloroplast
score 1.501

3) NUCPRED Prediction
localization Non Nuclear
score 0.1

4) Y-Loc Prediction
localization Cytoplasm
score 36
confidence value 0.08
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) IBF1
Function assigned as per literature IBF1 acts as a suppressor that could inhibit the brown pigmentation of rice hull furrows
Subcellular localization as per literature Cytoplasm
Cells used for localization experiment Arabidopsis protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 22419106
Reference of localization https://link.springer.com/content/pdf/10.1007%2Fs00122-012-1840-8.pdf
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.099
NLS score -0.47
Protein Sequence >LOC_Os09g12150.1 protein
MQHLHGDVLESAVERVPAPDLAAAALVSREWLRAVRAALRRRMLRLPWLVVHVIHLRGQRRLAAAYDPRSGAWLAVPTAPPARHGATSPPQPHSHVRLMR
GASGDRVCALSLSGLAVARDALGMDDDALVVALKAPGVWRVDPVLAAVGDRVVAMGGACRLALGDGEDTSAVEVHERGGWTHCGAVPTALRESAAAAATW
LSTAATDQRVYVADRATGTASWFDPAKQQWGPTSRLRPDATVSTWGLAAGRAGAEKIILFGVKHADSRVVIRSWEVDGDSLSLSHGAAAAHDTMPSEMSE
RLFPHGDDGEEETSSPSIGVCGNTAGGYVYNAAVPATGAVLYELRRGGVEGGGVERWAWVACAPVVAEAEALGRVILACSPVGLHELADERLAH

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No