LOC_Os09g11480

Expression Profile

RGAP LOCUS ID LOC_Os09g11480
RAP-DB ID Os09g0287000
Function AP2 domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 3.001

3) NUCPRED Prediction
localization Non Nuclear
score 0.38

4) Y-Loc Prediction
localization Nuclear
score 99.99
confidence value 0.99
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category AP2-EREBP/ERF

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) Sub1B
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 7
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.133
NLS score 2.03
Protein Sequence >LOC_Os09g11480.2 protein
MCGGALIPNDYGDKPPPPPSESSEWDATTKMKKKKKRGGGGDDDWEAAFREFIAGDDDDDDGGVSMFPSGAGTMETTTEVAPAAAVVERPRRRRRVRRSY
PYRGVRQRPWGRWASEIRDPVKGARVWLGTFDTAVEAARAYDAEARRIHGHKARTNFPPDEPPLPAPSQAPFCFLLDDDDDDDGVARGNSPASSSAPDRA
SACTTSSTVASGERGDELILLECCSDDVMDSLLAGFDVSSEPRSVLVWFLQFFVK

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term response to endogenous stimulus
4
GO Category Biological Process
GO Term signal transduction
5
GO Category Biological Process
GO Term biosynthetic process
6
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
7
GO Category Biological Process
GO Term response to stress
8
GO Category Biological Process
GO Term cell death
9
GO Category Cellular comBiological Processonent
GO Term cytoplasm
10
GO Category Molecular Function
GO Term protein binding
11
GO Category Biological Process
GO Term response to biotic stimulus
12
GO Category Cellular comBiological Processonent
GO Term plasma membrane
13
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES