LOC_Os09g10770

Expression Profile

RGAP LOCUS ID LOC_Os09g10770
RAP-DB ID Os09g0279600
Function OsTOP6B - Topoisomerase 6 subunit B, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 10

2) CELLO Prediction
localization Nuclear
score 1.772

3) NUCPRED Prediction
localization Non Nuclear
score 0.75

4) Y-Loc Prediction
localization Nuclear
score 99.7
confidence value 0.9
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsTOP6B
Function assigned as per literature TOP6 genes play a crucial role in stress adaptation of plants by altering gene expression
Subcellular localization as per literature Nucleus
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 17116242
Reference of localization https://febs.onlinelibrary.wiley.com/doi/epdf/10.1111/j.1742-4658.2006.05518.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.145
NLS score 0.55
Protein Sequence >LOC_Os09g10770.1 protein
MDDDAGDGAASGGTKRKVTAASSSAAAKGKAAGKGKAASKASALATAKESSLLKQKSPAEFFAENKNIAGFDNPGKSLYTTMRELVENALDSAESISELP
DIEIIIEEITKSKFNTMIGLVDRQRIDEELYDDFESAKAREKRLAKEARFQETQAKNAALGKKVKEAPAARGKGRGEAAFFRVTCKDNGRGMPHDDIPNM
LGRVLSGTKYGLRQTRGKFGLGAKMALIWSKMSTGLPIEIKSSMKGQNFISFCLLDIDIHKNVPHVHLHEKRENKDRWHGAELQVIIEGNWTTHRSKILH
YMRQMAVITPYAQFLFRFLSDSPDKNLTIQFARRTDVMPPIPLQTKHHPSAVDLLLIKRLISETTKQNLLQFLQHEFVNISKSHAERLIGEMGPDFSAKT
TVKSLTSQQLVRIHQLFRQAKFDDPSGNCLSPAGEYNLRLGIIKELHPDLVATHASSPQVFEGHPFIVEAGISIGGKDVKHGLNIFRYANRIPLLFEQGA
DVITRTALKRINWSSYKINQQQDKIGVFVSIVSTKIPFKGTGKEYIGDDITEIASAVQSALKQCCLQLKSKIVKKLQARERQDRKRNLNRYIPDVARAIM
ETLGEIADESPPKRPRYDKEDEELLEKVNSEEVTEMTFRDCLTQHVEQVDYEMALEYAMQSGVSEEPREALYLNSLEGSYKFIDFQSPVFVFRFIP

GO Analysis
1
GO Category Biological Process
GO Term response to endogenous stimulus
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Molecular Function
GO Term protein binding
4
GO Category Molecular Function
GO Term DNA binding
5
GO Category Molecular Function
GO Term hydrolase activity
6
GO Category Biological Process
GO Term DNA metabolic process
7
GO Category Biological Process
GO Term biosynthetic process
8
GO Category Biological Process
GO Term cell cycle
9
GO Category Cellular comBiological Processonent
GO Term intracellular
10
GO Category Biological Process
GO Term multicellular organismal development
11
GO Category Biological Process
GO Term cell differentiation
12
GO Category Biological Process
GO Term catabolic process
13
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
Presence of Splice variants No